Strain identifier
BacDive ID: 132082
Type strain: 
Species: Venenivibrio stagnispumantis
Strain Designation: CP B.2, CP.B2
Strain history: A. Hetzer.
NCBI tax ID(s): 407998 (species)
version 8.1 (current version)
General
@ref: 7609
BacDive-ID: 132082
DSM-Number: 18763
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, thermophilic, Gram-negative, motile, rod-shaped
description: Venenivibrio stagnispumantis CP B.2 is a microaerophile, thermophilic, Gram-negative bacterium that was isolated from terrestrial hot spring Champagne Pool in Waiotapu.
NCBI tax id
- NCBI tax id: 407998
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7609 | <- A. Hetzer, Thermophile Res. Unit, Univ. Waikato, Hamilton, New Zealand; CP B.2 |
| 67770 | A. Hetzer. |
doi: 10.13145/bacdive132082.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/aquificota
- domain: Bacteria
- phylum: Aquificota
- class: Aquificia
- order: Aquificales
- family: Hydrogenothermaceae
- genus: Venenivibrio
- species: Venenivibrio stagnispumantis
- full scientific name: Venenivibrio stagnispumantis Hetzer et al. 2008
@ref: 7609
domain: Bacteria
phylum: Aquificae
class: Aquificae
order: Aquificales
family: Hydrogenothermaceae
genus: Venenivibrio
species: Venenivibrio stagnispumantis
full scientific name: Venenivibrio stagnispumantis Hetzer et al. 2008
strain designation: CP B.2, CP.B2
type strain: yes
Morphology
cell morphology
- @ref: 32033
- gram stain: negative
- cell length: 1.3 µm
- cell width: 0.37 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
- @ref: 7609
- name: VENENIVIBRIO STAGNISPUMANTIS MEDIUM (DSMZ Medium 1146)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1146
- composition: Name: VENENIVIBRIO STAGNISPUMANTIS MEDIUM (DSMZ Medium 1146) Composition: MgSO4 x 7 H2O 7.0 g/l Na2S2O3 x 5 H2O 2.0 g/l MES 1.95 g/l MgCl2 x 6 H2O 1.36 g/l KCl 0.5 g/l CaCl2 x 2 H2O 0.4 g/l KH2PO4 0.25 g/l NH4Cl 0.2 g/l Na-EDTA x 2 H2O 0.005 g/l CoCl2 x 6 H2O 0.0015 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l ZnCl2 0.001 g/l AlCl3 x 6 H2O 0.0004 g/l Na-tungstate x 2 H2O 0.0003 g/l NiSO4 x 6 H2O 0.0002 g/l CuCl 0.0002 g/l Na2SeO3 0.0001 g/l H3BO3 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7609 | positive | growth | 70 | thermophilic |
| 32033 | positive | growth | 45-75 | thermophilic |
| 32033 | positive | optimum | 70 | thermophilic |
| 67770 | positive | growth | 70 | thermophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 32033 | positive | growth | 4.8-5.8 |
| 32033 | positive | optimum | 5.4 |
Physiology and metabolism
oxygen tolerance
- @ref: 32033
- oxygen tolerance: microaerophile
spore formation
- @ref: 32033
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32033 | NaCl | positive | growth | 0-0.8 % |
| 32033 | NaCl | positive | optimum | 0.4 % |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 7609 | terrestrial hot spring Champagne Pool in Waiotapu | New Zealand | NZL | Australia and Oceania |
| 67770 | Terrestrial hot spring in Waiotapu | New Zealand | NZL | Australia and Oceania |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Environmental | #Terrestrial | |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_120174.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_83;96_43297;97_55413;98_73335;99_120174&stattab=map
- Last taxonomy: Venenivibrio stagnispumantis subclade
- 16S sequence: DQ989208
- Sequence Identity:
- Total samples: 24
- soil counts: 2
- aquatic counts: 21
- animal counts: 1
Safety information
risk assessment
- @ref: 7609
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7609
- description: Venenivibrio stagnispumantis strain CP.B2 16S ribosomal RNA gene, complete sequence
- accession: DQ989208
- length: 1506
- database: ena
- NCBI tax ID: 407998
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Venenivibrio stagnispumantis DSM 18763 | 2724679818 | draft | img | 407998 |
| 66792 | Venenivibrio stagnispumantis CP.B2 | GCA_026108055 | scaffold | ncbi | 407998 |
GC content
- @ref: 7609
- GC-content: 29.3
External links
@ref: 7609
culture collection no.: DSM 18763, JCM 14244
straininfo link
- @ref: 90439
- straininfo: 324007
literature
- topic: Phylogeny
- Pubmed-ID: 18218938
- title: Venenivibrio stagnispumantis gen. nov., sp. nov., a thermophilic hydrogen-oxidizing bacterium isolated from Champagne Pool, Waiotapu, New Zealand.
- authors: Hetzer A, McDonald IR, Morgan HW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64842-0
- year: 2008
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, Genes, rRNA, Gram-Negative Chemolithotrophic Bacteria/*classification/genetics/growth & development/*isolation & purification, Hot Springs/*microbiology, *Hot Temperature, Hydrogen/*metabolism, Molecular Sequence Data, New Zealand, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity
- topic2: Stress
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 7609 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18763) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18763 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 32033 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28283 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 90439 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID324007.1 | StrainInfo: A central database for resolving microbial strain identifiers |