Strain identifier
BacDive ID: 13207
Type strain: 
Species: Actinokineospora baliensis
Strain Designation: ID 03-0561
Strain history: <- NBRC; NBRC 104211 <- P. Lisdiyanti(LIPI)and K. Ando(NITE); ID 03-0561
NCBI tax ID(s): 547056 (species)
version 8.1 (current version)
General
@ref: 18013
BacDive-ID: 13207
DSM-Number: 45656
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Actinokineospora baliensis ID 03-0561 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 547056
- Matching level: species
strain history
- @ref: 18013
- history: <- NBRC; NBRC 104211 <- P. Lisdiyanti(LIPI)and K. Ando(NITE); ID 03-0561
doi: 10.13145/bacdive13207.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinokineospora
- species: Actinokineospora baliensis
- full scientific name: Actinokineospora baliensis Lisdiyanti et al. 2010
@ref: 18013
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Actinokineospora
species: Actinokineospora baliensis
full scientific name: Actinokineospora baliensis Lisdiyanti et al. 2010
strain designation: ID 03-0561
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|
| 29447 | positive | 1.5-2 µm | rod-shaped | yes | |
| 69480 | positive | 100 |
pigmentation
- @ref: 29447
- production: yes
Culture and growth conditions
culture medium
- @ref: 18013
- name: BENNETT'S AGAR (DSMZ Medium 548)
- growth: yes
- link: https://mediadive.dsmz.de/medium/548
- composition: Name: BENNETT'S AGAR (DSMZ Medium 548) Composition: Agar 15.0 g/l Glucose 10.0 g/l N-Z amine 2.0 g/l Yeast extract 1.0 g/l Beef extract 1.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18013 | positive | growth | 28 | mesophilic |
| 29447 | positive | growth | 25-28 | mesophilic |
| 29447 | positive | optimum | 25-28 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 29447 | positive | growth | 7 |
| 29447 | positive | optimum | 7 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 29447 | yes | |
| 69481 | yes | 100 |
| 69480 | yes | 100 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29447 | NaCl | positive | growth | 0-1 % |
| 29447 | NaCl | positive | optimum | 0-1 % |
observation
- @ref: 29447
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29447 | 17234 | glucose | + | carbon source |
| 29447 | 17306 | maltose | + | carbon source |
| 29447 | 37684 | mannose | + | carbon source |
| 29447 | 17992 | sucrose | + | carbon source |
| 29447 | 27082 | trehalose | + | carbon source |
| 29447 | 4853 | esculin | + | hydrolysis |
| 29447 | 17632 | nitrate | + | reduction |
Isolation, sampling and environmental information
isolation
- @ref: 18013
- sample type: soil
- geographic location: Bali, Eka Karya Botanical Garden
- country: Indonesia
- origin.country: IDN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_119928.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_394;97_444;98_80846;99_119928&stattab=map
- Last taxonomy: Actinokineospora
- 16S sequence: AB447488
- Sequence Identity:
- Total samples: 113
- soil counts: 62
- aquatic counts: 7
- animal counts: 12
- plant counts: 32
Safety information
risk assessment
- @ref: 18013
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18013
- description: Actinokineospora baliensis gene for 16S rRNA, partial sequence, strain: NBRC 104211
- accession: AB447488
- length: 1451
- database: ena
- NCBI tax ID: 547056
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinokineospora baliensis DSM 45656 | GCA_016907695 | contig | ncbi | 547056 |
| 66792 | Actinokineospora baliensis strain DSM 45656 | 547056.3 | wgs | patric | 547056 |
| 66792 | Actinokineospora baliensis DSM 45656 | 2893647412 | draft | img | 547056 |
GC content
- @ref: 18013
- GC-content: 71.4
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| gram-positive | yes | 86.688 | no |
| anaerobic | no | 98.775 | no |
| halophile | no | 93.813 | yes |
| spore-forming | yes | 91.929 | no |
| glucose-util | yes | 86.862 | no |
| thermophile | no | 98.323 | yes |
| aerobic | yes | 90.906 | no |
| motile | yes | 53.133 | yes |
| flagellated | no | 88.166 | no |
| glucose-ferment | no | 92.862 | no |
External links
@ref: 18013
culture collection no.: DSM 45656, BTCC B554, NBRC 104211
straininfo link
- @ref: 82415
- straininfo: 406490
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19933586 | Actinokineospora baliensis sp. nov., Actinokineospora cibodasensis sp. nov. and Actinokineospora cianjurensis sp. nov., isolated from soil and plant litter. | Lisdiyanti P, Otoguro M, Ratnakomala S, Lestari Y, Hastuti RD, Triana E, Katsuhiko A, Widyastuti Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.013276-0 | 2009 | Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Indonesia, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Plants/*microbiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
| Phylogeny | 25378048 | Actinokineospora mzabensis sp. nov., a novel actinomycete isolated from Saharan soil. | Aouiche A, Bouras N, Mokrane S, Zitouni A, Schumann P, Sproer C, Sabaou N, Klenk HP | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0328-8 | 2014 | Actinobacteria/*classification/genetics/*isolation & purification/physiology, Africa, Northern, Algeria, Bacterial Typing Techniques, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Temperature, Vitamin K 2/analysis | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 18013 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45656) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45656 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29447 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25853 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 82415 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406490.1 | StrainInfo: A central database for resolving microbial strain identifiers |