Strain identifier
BacDive ID: 132055
Type strain:
Species: Nitrosomonas nitrosa
Strain Designation: Nm90
Strain history: <- A. Pommerening-Röser, Universitaet Hamburg, Dept. Mikrobiologie und Biotechnologie <- H. Harms and H.-P. Koops, Institut f. Allgemeine Botanik, Univ. Hamburg; Nm90
NCBI tax ID(s): 52442 (species)
General
@ref: 23846
BacDive-ID: 132055
DSM-Number: 28438
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Nitrosomonas nitrosa Nm90 is a mesophilic bacterium that was isolated from activated sludge of an industrial sewage plant.
NCBI tax id
- NCBI tax id: 52442
- Matching level: species
strain history
- @ref: 23846
- history: <- A. Pommerening-Röser, Universitaet Hamburg, Dept. Mikrobiologie und Biotechnologie <- H. Harms and H.-P. Koops, Institut f. Allgemeine Botanik, Univ. Hamburg; Nm90
doi: 10.13145/bacdive132055.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Nitrosomonadales
- family: Nitrosomonadaceae
- genus: Nitrosomonas
- species: Nitrosomonas nitrosa
- full scientific name: Nitrosomonas nitrosa Koops et al. 1991
@ref: 23846
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Nitrosomonadales
family: Nitrosomonadaceae
genus: Nitrosomonas
species: Nitrosomonas nitrosa
full scientific name: Nitrosomonas nitrosa Koops et al. 2001
strain designation: Nm90
type strain: yes
Morphology
multimedia
- @ref: 23846
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28438.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 23846
- name: MEDIUM FOR AMMONIA OXIDIZING BACTERIA (STRAINS FROM SOIL) (DSMZ Medium 1583)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1583
- composition: Name: MEDIUM FOR AMMONIA OXIDIZING BACTERIA (STRAINS FROM SOIL) (DSMZ Medium 1583) Composition: NaCl 0.584 g/l NH4Cl 0.535 g/l CaCl2 x 2 H2O 0.147 g/l KCl 0.074 g/l KH2PO4 0.054 g/l MgSO4 x 7 H2O 0.049 g/l Cresol red 0.001 g/l FeSO4 x 7 H2O 0.000973 g/l H3BO3 4.9e-05 g/l MnSO4 x 4 H2O 4.5e-05 g/l ZnSO4 x 7 H2O 4.3e-05 g/l (NH4)6Mo7O24 x 4 H2O 3.7e-05 g/l CuSO4 x 5 H2O 2.5e-05 g/l HCl Distilled water
culture temp
- @ref: 23846
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23846
- sample type: activated sludge of an industrial sewage plant
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Industrial | |
#Engineered | #Waste | #Activated sludge |
#Engineered | #Waste | #Water treatment plant |
taxonmaps
- @ref: 69479
- File name: preview.99_99198.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_316;96_1268;97_1503;98_67870;99_99198&stattab=map
- Last taxonomy: Nitrosomonas nitrosa subclade
- 16S sequence: NR_104819
- Sequence Identity:
- Total samples: 494
- soil counts: 305
- aquatic counts: 132
- animal counts: 37
- plant counts: 20
Safety information
risk assessment
- @ref: 23846
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
23846 | Nitrosomonas nitrosa 16S rRNA gene, strain Nm90 | FR828477 | 1462 | ena | 52442 |
23846 | Nitrosomonas nitrosa strain Nm90 16S ribosomal RNA, partial sequence | NR_104819 | 1462 | nuccore | 52442 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Nitrosomonas nitrosa Nm90 | GCA_003051105 | contig | ncbi | 52442 |
66792 | Nitrosomonas nitrosa Nm90 | 2737471640 | draft | img | 52442 |
External links
@ref: 23846
culture collection no.: DSM 28438
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
23846 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28438 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28438) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |