Strain identifier

BacDive ID: 132055

Type strain: Yes

Species: Nitrosomonas nitrosa

Strain Designation: Nm90

Strain history: <- A. Pommerening-Röser, Universitaet Hamburg, Dept. Mikrobiologie und Biotechnologie <- H. Harms and H.-P. Koops, Institut f. Allgemeine Botanik, Univ. Hamburg; Nm90

NCBI tax ID(s): 52442 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23846

BacDive-ID: 132055

DSM-Number: 28438

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Nitrosomonas nitrosa Nm90 is a mesophilic bacterium that was isolated from activated sludge of an industrial sewage plant.

NCBI tax id

  • NCBI tax id: 52442
  • Matching level: species

strain history

  • @ref: 23846
  • history: <- A. Pommerening-Röser, Universitaet Hamburg, Dept. Mikrobiologie und Biotechnologie <- H. Harms and H.-P. Koops, Institut f. Allgemeine Botanik, Univ. Hamburg; Nm90

doi: 10.13145/bacdive132055.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Nitrosomonadales
  • family: Nitrosomonadaceae
  • genus: Nitrosomonas
  • species: Nitrosomonas nitrosa
  • full scientific name: Nitrosomonas nitrosa Koops et al. 1991

@ref: 23846

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Nitrosomonadales

family: Nitrosomonadaceae

genus: Nitrosomonas

species: Nitrosomonas nitrosa

full scientific name: Nitrosomonas nitrosa Koops et al. 2001

strain designation: Nm90

type strain: yes

Morphology

multimedia

  • @ref: 23846
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28438.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 23846
  • name: MEDIUM FOR AMMONIA OXIDIZING BACTERIA (STRAINS FROM SOIL) (DSMZ Medium 1583)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1583
  • composition: Name: MEDIUM FOR AMMONIA OXIDIZING BACTERIA (STRAINS FROM SOIL) (DSMZ Medium 1583) Composition: NaCl 0.584 g/l NH4Cl 0.535 g/l CaCl2 x 2 H2O 0.147 g/l KCl 0.074 g/l KH2PO4 0.054 g/l MgSO4 x 7 H2O 0.049 g/l Cresol red 0.001 g/l FeSO4 x 7 H2O 0.000973 g/l H3BO3 4.9e-05 g/l MnSO4 x 4 H2O 4.5e-05 g/l ZnSO4 x 7 H2O 4.3e-05 g/l (NH4)6Mo7O24 x 4 H2O 3.7e-05 g/l CuSO4 x 5 H2O 2.5e-05 g/l HCl Distilled water

culture temp

  • @ref: 23846
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23846
  • sample type: activated sludge of an industrial sewage plant
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial
#Engineered#Waste#Activated sludge
#Engineered#Waste#Water treatment plant

taxonmaps

  • @ref: 69479
  • File name: preview.99_99198.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_316;96_1268;97_1503;98_67870;99_99198&stattab=map
  • Last taxonomy: Nitrosomonas nitrosa subclade
  • 16S sequence: NR_104819
  • Sequence Identity:
  • Total samples: 494
  • soil counts: 305
  • aquatic counts: 132
  • animal counts: 37
  • plant counts: 20

Safety information

risk assessment

  • @ref: 23846
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
23846Nitrosomonas nitrosa 16S rRNA gene, strain Nm90FR8284771462ena52442
23846Nitrosomonas nitrosa strain Nm90 16S ribosomal RNA, partial sequenceNR_1048191462nuccore52442

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Nitrosomonas nitrosa Nm90GCA_003051105contigncbi52442
66792Nitrosomonas nitrosa Nm902737471640draftimg52442

External links

@ref: 23846

culture collection no.: DSM 28438

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23846Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28438Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28438)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/