Strain identifier
BacDive ID: 132052
Type strain: 
Species: Lamprobacter modestohalophilus
Strain Designation: Sivash
Strain history: <- V. Gorlenko, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; Sivash <- V. M. Gorlenko
NCBI tax ID(s): 1064514 (species)
version 8.1 (current version)
General
@ref: 23843
BacDive-ID: 132052
DSM-Number: 25653
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Lamprobacter modestohalophilus Sivash is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from mud of lake Sivash.
NCBI tax id
- NCBI tax id: 1064514
- Matching level: species
strain history
- @ref: 23843
- history: <- V. Gorlenko, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; Sivash <- V. M. Gorlenko
doi: 10.13145/bacdive132052.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Chromatiaceae
- genus: Lamprobacter
- species: Lamprobacter modestohalophilus
- full scientific name: Lamprobacter modestohalophilus Gorlenko et al. 1988
@ref: 23843
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Chromatiaceae
genus: Lamprobacter
species: Lamprobacter modestohalophilus
full scientific name: Lamprobacter modestohalophilus Gorlenko et al. 1988
strain designation: Sivash
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 99.999 | |
| 69480 | 95.975 | yes |
Culture and growth conditions
culture medium
- @ref: 23843
- name: LAMPROBACTER MEDIUM (DSMZ Medium 1389)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1389
- composition: Name: LAMPROBACTER MEDIUM (DSMZ Medium 1389) Composition: NaCl 40.0 g/l NaHCO3 1.5 g/l Na-acetate 0.5 g/l KH2PO4 0.5 g/l Na2S x 9 H2O 0.5 g/l NH4Cl 0.5 g/l Na2S2O3 x 5 H2O 0.5 g/l Yeast extract 0.5 g/l KCl 0.33 g/l MgCl2 x 6 H2O 0.2 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.0022 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l H3BO3 3e-05 g/l CuCl2 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 3e-05 g/l Vitamin B12 1e-05 g/l Distilled water
culture temp
- @ref: 23843
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 98.133
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 98 |
| 69480 | no | 99.983 |
Isolation, sampling and environmental information
isolation
- @ref: 23843
- sample type: mud of lake Sivash
- geographic location: Crimea, Sivash
- country: Ukraine
- origin.country: UKR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Terrestrial | #Mud (Sludge) |
Safety information
risk assessment
- @ref: 23843
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23843
- description: Lamprobacter modestohalophilus strain Sivash 16S ribosomal RNA gene, partial sequence
- accession: HQ877095
- length: 1416
- database: ena
- NCBI tax ID: 1064514
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Lamprobacter modestohalophilus DSM 25653 | GCA_016583905 | scaffold | ncbi | 1064514 |
| 66792 | Lamprobacter modestohalophilus strain DSM 25653 | 1064514.6 | wgs | patric | 1064514 |
GC content
- @ref: 23843
- GC-content: 62.5
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 98 | no |
| motile | yes | 80.584 | no |
| flagellated | no | 58.745 | no |
| gram-positive | no | 98.86 | no |
| anaerobic | yes | 96.718 | no |
| aerobic | no | 93.885 | no |
| halophile | no | 84.003 | no |
| spore-forming | no | 91.5 | no |
| thermophile | no | 98.628 | yes |
| glucose-util | yes | 66.071 | no |
| glucose-ferment | no | 84.85 | no |
External links
@ref: 23843
culture collection no.: DSM 25653, VKM B-2538, INMI RO-1, Gorlenko V.M. INMI, Sivash
straininfo link
- @ref: 90413
- straininfo: 398948
literature
- topic: Phylogeny
- Pubmed-ID: 25916149
- title: [Phylogenetic position of the purple sulfur bacterium Lamprobacter modestohalophilus determined based on the data on new strains of the species].
- authors: Gorlenko VM, Briantseva IA, Lunina ON, Turova TP
- journal: Mikrobiologiia
- year: 2015
- mesh: Bacterial Typing Techniques, Bacteriochlorophyll A/biosynthesis, Carotenoids/biosynthesis, Chromatiaceae/*classification/genetics/metabolism, Chromatium/*classification/genetics/metabolism, *Genes, rRNA, Hydrogen-Ion Concentration, *Phylogeny, RNA, Ribosomal, 16S/*genetics, Salt Tolerance, Sequence Analysis, DNA, Temperature
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23843 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25653 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25653) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 90413 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398948.1 |