Strain identifier
BacDive ID: 132032
Type strain: 
Species: Christensenella timonensis
Strain history: <- F. Cadoret, Timone Hospital, Marseille, France; Marseille-P2437 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2016}
NCBI tax ID(s): 1816678 (species)
version 8.1 (current version)
General
@ref: 23823
BacDive-ID: 132032
DSM-Number: 102800
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Christensenella timonensis DSM 102800 is a mesophilic bacterium that was isolated from human stool specimen from a 66-year-old patient.
NCBI tax id
- NCBI tax id: 1816678
- Matching level: species
strain history
- @ref: 23823
- history: <- F. Cadoret, Timone Hospital, Marseille, France; Marseille-P2437 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2016}
doi: 10.13145/bacdive132032.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Christensenellaceae
- genus: Christensenella
- species: Christensenella timonensis
- full scientific name: Christensenella timonensis Ndongo et al. 2016
@ref: 23823
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Christensenellaceae
genus: Christensenella
species: Christensenella timonensis
full scientific name: Christensenella timonensis Ndongo et al. 2016
type strain: no
Culture and growth conditions
culture medium
- @ref: 23823
- name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110a
- composition: Name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water
culture temp
- @ref: 23823
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23823
- sample type: human stool specimen from a 66-year-old patient
- geographic location: Marseille, Timone Hospital
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | #Specimen |
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_5246.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_294;96_1147;97_3114;98_3911;99_5246&stattab=map
- Last taxonomy: Christensenella timonensis subclade
- 16S sequence: LT223568
- Sequence Identity:
- Total samples: 21507
- soil counts: 245
- aquatic counts: 398
- animal counts: 20777
- plant counts: 87
Sequence information
16S sequences
- @ref: 23823
- description: Christensenella sp. Marseille-P2437 partial 16S rRNA gene, strain Marseille-P2437T
- accession: LT223568
- length: 1498
- database: ena
- NCBI tax ID: 1816678
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Christensenella timonensis Marseille-P2437T | GCA_900087015 | contig | ncbi | 1816678 |
| 66792 | Christensenella timonensis Marseille-P2437 | 2791354907 | draft | img | 1816678 |
External links
@ref: 23823
culture collection no.: DSM 102800, CSUR P2437, Marseille-P2437
literature
| Pubmed-ID | title | authors | journal | DOI | year |
|---|---|---|---|---|---|
| 27408737 | Christensenella timonensis, a new bacterial species isolated from the human gut. | Ndongo S, Dubourg G, Khelaifia S, Fournier PE, Raoult D | New Microbes New Infect | 10.1016/j.nmni.2016.05.010 | 2016 |
| 36312936 | Christensenella regulated by Huang-Qi-Ling-Hua-San is a key factor by which to improve type 2 diabetes. | Pan T, Zheng S, Zheng W, Shi C, Ning K, Zhang Q, Xie Y, Xiang H, Xie Q | Front Microbiol | 10.3389/fmicb.2022.1022403 | 2022 |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23823 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102800 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102800) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |