Strain identifier
BacDive ID: 132031
Type strain: 
Species: Christensenella massiliensis
Strain history: <- F. Cadoret, Timone Hospital, Marseille, France; Marseille-P2438 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2016}
NCBI tax ID(s): 1805714 (species)
version 8.1 (current version)
General
@ref: 23822
BacDive-ID: 132031
DSM-Number: 102344
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Christensenella massiliensis DSM 102344 is a mesophilic bacterium that was isolated from human stool specimen from a 66-year-old patient.
NCBI tax id
- NCBI tax id: 1805714
- Matching level: species
strain history
- @ref: 23822
- history: <- F. Cadoret, Timone Hospital, Marseille, France; Marseille-P2438 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2016}
doi: 10.13145/bacdive132031.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Christensenellaceae
- genus: Christensenella
- species: Christensenella massiliensis
- full scientific name: Christensenella massiliensis Ndongo et al. 2016
@ref: 23822
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Christensenellaceae
genus: Christensenella
species: Christensenella massiliensis
full scientific name: Christensenella massiliensis Ndongo et al. 2016
type strain: no
Culture and growth conditions
culture medium
- @ref: 23822
- name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110a
- composition: Name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water
culture temp
- @ref: 23822
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23822
- sample type: human stool specimen from a 66-year-old patient
- geographic location: Marseille, Timone Hospital
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | #Specimen |
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_7083.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_294;96_1147;97_1347;98_5209;99_7083&stattab=map
- Last taxonomy: Christensenella massiliensis subclade
- 16S sequence: LT161898
- Sequence Identity:
- Total samples: 14726
- soil counts: 95
- aquatic counts: 233
- animal counts: 14391
- plant counts: 7
Sequence information
16S sequences
- @ref: 23822
- description: Christensenella sp. Marseille-P2438 partial 16S rRNA gene, strain Marseille-P2438
- accession: LT161898
- length: 1499
- database: ena
- NCBI tax ID: 1805714
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Christensenella massiliensis Marseille-P2438 | GCA_900155415 | complete | ncbi | 1805714 |
| 66792 | Christensenella massiliensis Marseille-P2438 | 2757320871 | complete | img | 1805714 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 90.147 | no |
| flagellated | no | 97.377 | no |
| gram-positive | yes | 66.13 | no |
| anaerobic | yes | 99.329 | no |
| aerobic | no | 98.996 | no |
| halophile | no | 90.969 | no |
| spore-forming | no | 87.296 | no |
| thermophile | no | 79.751 | yes |
| glucose-util | yes | 84.206 | no |
| glucose-ferment | yes | 60.129 | no |
External links
@ref: 23822
culture collection no.: DSM 102344, CSUR P2438, Marseille-P2438
literature
- Pubmed-ID: 27330817
- title: Christensenella massiliensis, a new bacterial species isolated from the human gut.
- authors: Ndongo S, Khelaifia S, Fournier PE, Raoult D
- journal: New Microbes New Infect
- DOI: 10.1016/j.nmni.2016.04.014
- year: 2016
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23822 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102344 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102344) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |