Strain identifier
BacDive ID: 132029
Type strain: 
Species: Clostridium nigeriense
Strain Designation: P2414
Strain history: <- F. Cadoret, Timone Hospital, Marseille, France; P2414 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2016}
NCBI tax ID(s): 1869227 (species)
General
@ref: 23820
BacDive-ID: 132029
DSM-Number: 102218
keywords: 16S sequence, Bacteria, mesophilic
description: Clostridium nigeriense P2414 is a mesophilic bacterium that was isolated from Stool sample from child patient of Timone Hospital.
NCBI tax id
- NCBI tax id: 1869227
- Matching level: species
strain history
- @ref: 23820
- history: <- F. Cadoret, Timone Hospital, Marseille, France; P2414 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2016}
doi: 10.13145/bacdive132029.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium nigeriense
- full scientific name: Clostridium nigeriense Alou et al. 2018
@ref: 23820
domain: Bacteria
phylum: Not assigned to order
class: Not assigned to order
order: Clostridiales
family: Not assigned to family
genus: unclassified
species: unclassified bacterium
full scientific name: unclassified bacterium
strain designation: P2414
type strain: no
Culture and growth conditions
culture medium
- @ref: 23820
- name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110a
- composition: Name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water
culture temp
- @ref: 23820
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23820
- sample type: Stool sample from child patient of Timone Hospital
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Medical environment | #Clinic |
| #Infection | #Patient | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Human | #Child |
taxonmaps
- @ref: 69479
- File name: preview.99_5038.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_1253;97_2035;98_2501;99_5038&stattab=map
- Last taxonomy: Clostridium nigeriense
- 16S sequence: LT161894
- Sequence Identity:
- Total samples: 6848
- soil counts: 424
- aquatic counts: 594
- animal counts: 5764
- plant counts: 66
Sequence information
16S sequences
- @ref: 23820
- description: Clostridium sp. Marseille-P2414T partial 16S rRNA gene, type strain Marseille-P2414T
- accession: LT161894
- length: 1479
- database: ena
- NCBI tax ID: 1805470
External links
@ref: 23820
culture collection no.: DSM 102218, CSUR P2414
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23820 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102218 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102218) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |