Strain identifier

BacDive ID: 132022

Type strain: No

Species: unclassified bacterium

Strain Designation: SB2

Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; SB2 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes

NCBI tax ID(s): 1869227 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 23813

BacDive-ID: 132022

DSM-Number: 100743

keywords: 16S sequence, mesophilic

description: unclassified bacterium SB2 is a mesophilic prokaryote that was isolated from stool specimen.

NCBI tax id

  • NCBI tax id: 1869227
  • Matching level: species

strain history

  • @ref: 23813
  • history: <- S. Khelaifia, Timone Hospital, Marseille, France; SB2 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes

doi: 10.13145/bacdive132022.20230509.8.1

Name and taxonomic classification

@ref: 23813

phylum: Not assigned to order

class: Not assigned to order

order: Clostridiales

family: Not assigned to family

genus: unclassified

species: unclassified bacterium

full scientific name: unclassified bacterium

strain designation: SB2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23813
  • name: PY + X MEDIUM (DSMZ Medium 104b)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104b
  • composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 23813
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23813
  • sample type: stool specimen
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Specimen
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1651.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_942;97_1096;98_1307;99_1651&stattab=map
  • Last taxonomy: Faecalicatena
  • 16S sequence: LN850732
  • Sequence Identity:
  • Total samples: 11013
  • soil counts: 35
  • aquatic counts: 110
  • animal counts: 10845
  • plant counts: 23

Sequence information

16S sequences

  • @ref: 23813
  • description: Eubacterium sp. SB2 partial 16S rRNA gene, strain SB2
  • accession: LN850732
  • length: 1506
  • database: ena
  • NCBI tax ID: 1658112

External links

@ref: 23813

culture collection no.: DSM 100743, CSUR P1926

Reference

@idauthorscataloguedoi/urltitle
23813Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100743)https://www.dsmz.de/collection/catalogue/details/culture/DSM-100743
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta