Strain identifier
BacDive ID: 132021
Type strain: 
Species: Niameybacter massiliensis
Strain Designation: Mt14
Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; Mt14 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2015}
NCBI tax ID(s): 1658108 (species)
version 8.1 (current version)
General
@ref: 23812
BacDive-ID: 132021
DSM-Number: 100592
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile
description: Niameybacter massiliensis Mt14 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from stool specimen of healthy African infant.
NCBI tax id
- NCBI tax id: 1658108
- Matching level: species
strain history
- @ref: 23812
- history: <- S. Khelaifia, Timone Hospital, Marseille, France; Mt14 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2015}
doi: 10.13145/bacdive132021.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Niameybacter
- species: Niameybacter massiliensis
- full scientific name: Niameybacter massiliensis Tidjani Alou et al. 2017
@ref: 23812
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Niameybacter
species: Niameybacter massiliensis
full scientific name: Niameybacter massiliensis Tidjani Alou et al. 2017
strain designation: Mt14
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 93.62 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 23812
- name: PY + X MEDIUM (DSMZ Medium 104b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104b
- composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 23812
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.408
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 97 |
| 69480 | yes | 99.593 |
Isolation, sampling and environmental information
isolation
- @ref: 23812
- sample type: stool specimen of healthy African infant
- country: Niger
- origin.country: NER
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | #Specimen |
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_1507.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_180;96_862;97_1008;98_1190;99_1507&stattab=map
- Last taxonomy: Niameybacter massiliensis subclade
- 16S sequence: LN850735
- Sequence Identity:
- Total samples: 2403
- soil counts: 36
- aquatic counts: 109
- animal counts: 2243
- plant counts: 15
Sequence information
16S sequences
- @ref: 23812
- description: Lachnospiraceae bacterium mt14 partial 16S rRNA gene, strain mt14
- accession: LN850735
- length: 1488
- database: ena
- NCBI tax ID: 1658108
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Niameybacter massiliensis Mt14 | GCA_001282685 | scaffold | ncbi | 1658108 |
| 66792 | Niameybacter massiliensis mt14 | 2775506840 | draft | img | 1658108 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 97 | no |
| motile | yes | 83.597 | no |
| flagellated | yes | 54.818 | no |
| gram-positive | yes | 71.342 | no |
| anaerobic | yes | 98.837 | no |
| halophile | no | 88.233 | no |
| spore-forming | yes | 85.898 | no |
| glucose-util | yes | 85.916 | no |
| aerobic | no | 98.283 | no |
| thermophile | no | 99.026 | yes |
| glucose-ferment | yes | 70.449 | no |
External links
@ref: 23812
culture collection no.: DSM 100592, CSUR P1909
literature
- Pubmed-ID: 28652919
- title: 'Khelaifiella massiliensis', 'Niameybacter massiliensis', 'Brachybacterium massiliense', 'Enterobacter timonensis', 'Massilibacillus massiliensis', new bacterial species and genera isolated from the gut microbiota of healthy infants.
- authors: Tidjani Alou M, Cadoret F, Brah S, Diallo A, Sokhna C, Mehrej V, Lagier JC, Fournier PE, Raoult D
- journal: New Microbes New Infect
- DOI: 10.1016/j.nmni.2017.02.002
- year: 2017
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23812 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100592 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100592) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |