Strain identifier

BacDive ID: 132020

Type strain: No

Species: Haloimpatiens massiliensis

Strain Designation: Mt13

Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; Mt13 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2015}

NCBI tax ID(s): 1658110 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23811

BacDive-ID: 132020

DSM-Number: 100591

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile

description: Haloimpatiens massiliensis Mt13 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from stool specimen of healthy African infant.

NCBI tax id

  • NCBI tax id: 1658110
  • Matching level: species

strain history

  • @ref: 23811
  • history: <- S. Khelaifia, Timone Hospital, Marseille, France; Mt13 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2015}

doi: 10.13145/bacdive132020.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Haloimpatiens
  • species: Haloimpatiens massiliensis
  • full scientific name: Haloimpatiens massiliensis Anani et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Khelaifiella massiliensis

@ref: 23811

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Clostridiaceae

genus: Khelaifiella

species: Khelaifiella massiliensis

full scientific name: Khelaifiella massiliensis Tidjani Alou et al. 2017

strain designation: Mt13

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes90.248
69480100positive

Culture and growth conditions

culture medium

  • @ref: 23811
  • name: PY + X MEDIUM (DSMZ Medium 104b)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104b
  • composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 23811
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 99.678

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

isolation

  • @ref: 23811
  • sample type: stool specimen of healthy African infant
  • country: Niger
  • origin.country: NER
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Specimen
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_22080.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_302;97_334;98_375;99_22080&stattab=map
  • Last taxonomy: Haloimpatiens lingqiaonensis
  • 16S sequence: LN850733
  • Sequence Identity:
  • Total samples: 1182
  • soil counts: 251
  • aquatic counts: 373
  • animal counts: 529
  • plant counts: 29

Sequence information

16S sequences

  • @ref: 23811
  • description: Clostridiaceae bacterium mt13 partial 16S rRNA gene, strain mt13
  • accession: LN850733
  • length: 1476
  • database: ena
  • NCBI tax ID: 1658110

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Khelaifiella massiliensis Mt132831408181draftimg1658110
66792Haloimpatiens massiliensis Mt13GCA_900184255scaffoldncbi1658110

Genome-based predictions

predictions

  • trait: spore-forming
  • prediction: yes
  • confidence: 100
  • training_data: no

External links

@ref: 23811

culture collection no.: DSM 100591, CSUR P1935

literature

  • topic: Genetics
  • Pubmed-ID: 31908786
  • title: Taxono-genomics and description of Haloimpatiens massiliensis sp. nov., a new bacterium isolated from the gut of a healthy infant.
  • authors: Anani H, Tidjani Alou M, Fontanini A, Raoult D, Lagier JC, Fournier PE
  • journal: New Microbes New Infect
  • DOI: 10.1016/j.nmni.2019.100631
  • year: 2019
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23811Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100591Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100591)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1