Strain identifier
BacDive ID: 132020
Type strain:
Species: Haloimpatiens massiliensis
Strain Designation: Mt13
Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; Mt13 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2015}
NCBI tax ID(s): 1658110 (species)
General
@ref: 23811
BacDive-ID: 132020
DSM-Number: 100591
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile
description: Haloimpatiens massiliensis Mt13 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from stool specimen of healthy African infant.
NCBI tax id
- NCBI tax id: 1658110
- Matching level: species
strain history
- @ref: 23811
- history: <- S. Khelaifia, Timone Hospital, Marseille, France; Mt13 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2015}
doi: 10.13145/bacdive132020.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Haloimpatiens
- species: Haloimpatiens massiliensis
- full scientific name: Haloimpatiens massiliensis Anani et al. 2020
synonyms
- @ref: 20215
- synonym: Khelaifiella massiliensis
@ref: 23811
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Khelaifiella
species: Khelaifiella massiliensis
full scientific name: Khelaifiella massiliensis Tidjani Alou et al. 2017
strain designation: Mt13
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 90.248 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 23811
- name: PY + X MEDIUM (DSMZ Medium 104b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104b
- composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 23811
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.678
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 23811
- sample type: stool specimen of healthy African infant
- country: Niger
- origin.country: NER
- continent: Africa
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Patient | #Specimen |
#Host | #Human | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_22080.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_302;97_334;98_375;99_22080&stattab=map
- Last taxonomy: Haloimpatiens lingqiaonensis
- 16S sequence: LN850733
- Sequence Identity:
- Total samples: 1182
- soil counts: 251
- aquatic counts: 373
- animal counts: 529
- plant counts: 29
Sequence information
16S sequences
- @ref: 23811
- description: Clostridiaceae bacterium mt13 partial 16S rRNA gene, strain mt13
- accession: LN850733
- length: 1476
- database: ena
- NCBI tax ID: 1658110
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Khelaifiella massiliensis Mt13 | 2831408181 | draft | img | 1658110 |
66792 | Haloimpatiens massiliensis Mt13 | GCA_900184255 | scaffold | ncbi | 1658110 |
Genome-based predictions
predictions
- trait: spore-forming
- prediction: yes
- confidence: 100
- training_data: no
External links
@ref: 23811
culture collection no.: DSM 100591, CSUR P1935
literature
- topic: Genetics
- Pubmed-ID: 31908786
- title: Taxono-genomics and description of Haloimpatiens massiliensis sp. nov., a new bacterium isolated from the gut of a healthy infant.
- authors: Anani H, Tidjani Alou M, Fontanini A, Raoult D, Lagier JC, Fournier PE
- journal: New Microbes New Infect
- DOI: 10.1016/j.nmni.2019.100631
- year: 2019
- topic2: Phylogeny
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
23811 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100591 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100591) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |