Strain identifier

BacDive ID: 131971

Type strain: No

Species: Sphingomonas sp.

Strain Designation: Leaf208

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf208 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 28214 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 23763

BacDive-ID: 131971

DSM-Number: 102754

keywords: genome sequence, Bacteria, mesophilic

description: Sphingomonas sp. Leaf208 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

  • NCBI tax id: 28214
  • Matching level: species

strain history

  • @ref: 23763
  • history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf208 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131971.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas sp.
  • full scientific name: Sphingomonas Yabuuchi et al. 1990

@ref: 23763

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Pseudomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas sp.

full scientific name: Sphingomonas sp.

strain designation: Leaf208

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23763
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 23763
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23763
  • sample type: leaf of Arabidopsis thaliana, wild-type genotype
  • host species: Arabidopsis thaliana
  • geographic location: Tuebingen Farm (48.5560194N 9.134944444E)
  • country: Germany
  • origin.country: DEU
  • continent: Europe
  • latitude: 48.556
  • longitude: 9.1349

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sphingomonas sp. Leaf208GCA_001421415scaffoldncbi1735679
66792Sphingomonas sp. Leaf2081735679.3wgspatric1735679
66792Sphingomonas sp. Leaf2082643221794draftimg1735679

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno90.66no
gram-positiveno96.729no
anaerobicno98.966no
aerobicyes94.149no
halophileno93.73no
spore-formingno94.413no
thermophileno99.36no
glucose-utilyes90.655no
motileyes76.223no
glucose-fermentno89.343no

External links

@ref: 23763

culture collection no.: DSM 102754

straininfo link

  • @ref: 90358
  • straininfo: 398493

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23763Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102754Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102754)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90358Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398493.1