Archive BacDiveID:10.13145/bacdive131968.20230509.8.1

Strain identifier

BacDive ID: 131968

Type strain:

Species: Sphingomonas sp.

Strain Designation: Leaf205

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf205 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 28214 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23760

BacDive-ID: 131968

DSM-Number: 102751

keywords: genome sequence, Bacteria, mesophilic

description: Sphingomonas sp. Leaf205 is a mesophilic bacterium that was isolated from leaf of wild type Arabidopsis thaliana.

NCBI tax id

NCBI tax id: 28214
Matching level: species

strain history

@ref: 23760
history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf205 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131968.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas sp.
full scientific name: Sphingomonas Yabuuchi et al. 1990

@ref: 23760

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Pseudomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas sp.

full scientific name: Sphingomonas sp.

strain designation: Leaf205

type strain: no

Culture and growth conditions

culture medium

@ref: 23760
name: R2A MEDIUM (DSMZ Medium 830)
growth: yes
link: https://mediadive.dsmz.de/medium/830
composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@ref: 23760
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23760
sample type: leaf of wild type Arabidopsis thaliana
host species: Arabidopsis thaliana
geographic location: ETH Zurich (47.4074722N 8.50825E)
country: Switzerland
origin.country: CHE
continent: Europe
latitude: 47.4075
longitude: 8.5083

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Sphingomonas sp. Leaf205 Leaf205	GCA_920984725	contig	ncbi	2876551
66792	Sphingomonas sp. Leaf205	2876551.3	wgs	patric	2876551

Genome-based predictions

predictions

trait	prediction	confidence	training_data
gram-positive	no	96.825	no
anaerobic	no	98.863	no
halophile	no	93.744	no
spore-forming	no	93.191	no
glucose-util	yes	88.438	no
motile	yes	74.532	no
flagellated	no	89.623	no
aerobic	yes	92.099	no
thermophile	no	99.376	yes
glucose-ferment	no	88.92	no

External links

@ref: 23760

culture collection no.: DSM 102751

straininfo link

@ref: 90355
straininfo: 408128

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23760	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102751	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102751)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90355	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID408128.1