Strain identifier

BacDive ID: 13196

Type strain: Yes

Species: Actinokineospora fastidiosa

Strain history: KCC A-0276 <-- S. ?mura KA-605 <-- ATCC 31181 <-- Chas. Pfizer & Co.; FD 25028.

NCBI tax ID(s): 1816 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 11337

BacDive-ID: 13196

DSM-Number: 43855

keywords: mesophilic, Bacteria, 16S sequence

description: Actinokineospora fastidiosa DSM 43855 is a mesophilic Actinobacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1816
  • Matching level: species

strain history

doi: 10.13145/bacdive13196.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinokineospora
  • species: Actinokineospora fastidiosa
  • full scientific name: Actinokineospora fastidiosa (Henssen et al. 1987) Labeda et al. 2010
  • synonyms

    • @ref: 20215
    • synonym: Amycolatopsis fastidiosa

@ref: 11337

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Actinokineospora

species: Actinokineospora fastidiosa

full scientific name: Actinokineospora fastidiosa (Henssen et al. 1987) Labeda et al. 2010

type strain: yes

Morphology

multimedia

  • @ref: 11337
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_43855.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 11337
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
11337positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
11337antibiotic 41,043 and 41,494
67770Antibiotic 41,494

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H2)

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
11337soilEgyptEGYAfrica
67770SoilEgyptEGYAfrica

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 11337
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Amycolatopsis fastidiosa 16S rRNA (part.)X532001331ena1816
11337Amycolatopsis fastidiosa strain NRRL B-16697 16S ribosomal RNA gene, partial sequenceGQ2006011408ena1816
67770Amycolatopsis fastidiosa partial 16S rRNA gene, strain IMSNU 20054TAJ4007101489ena1816

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinokineospora fastidiosa JCM 3276GCA_014648415scaffoldncbi1816
66792Actinokineospora fastidiosa strain JCM 32761816.5wgspatric1816

GC content

  • @ref: 67770
  • GC-content: 73
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 11337

culture collection no.: DSM 43855, ATCC 31181, IFO 14105, JCM 3276, NBRC 14105, NRRL B-16697, VKM Ac-1419, BCRC 13397, CGMCC 4.1172, IFM 0209, IMSNU 20054, KCTC 9155, KCTC 9297

straininfo link

@refpassport
20218http://www.straininfo.net/strains/107832
20218http://www.straininfo.net/strains/107830
20218http://www.straininfo.net/strains/168877
20218http://www.straininfo.net/strains/168878
20218http://www.straininfo.net/strains/333669
20218http://www.straininfo.net/strains/176497
20218http://www.straininfo.net/strains/176498

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11337Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43855)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43855
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/