Strain identifier

BacDive ID: 131956

Type strain: No

Species: Sphingomonas sp.

Strain Designation: Leaf11

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf11 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 28214 (species)

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General

@ref: 23748

BacDive-ID: 131956

DSM-Number: 102739

keywords: genome sequence, Bacteria, mesophilic

description: Sphingomonas sp. Leaf11 is a mesophilic bacterium that was isolated from leaf of wild-type Arabidopsis thaliana.

NCBI tax id

  • NCBI tax id: 28214
  • Matching level: species

strain history

  • @ref: 23748
  • history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf11 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131956.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas sp.
  • full scientific name: Sphingomonas Yabuuchi et al. 1990

@ref: 23748

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Pseudomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas sp.

full scientific name: Sphingomonas sp.

strain designation: Leaf11

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23748
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 23748
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23748
  • sample type: leaf of wild-type Arabidopsis thaliana
  • host species: Arabidopsis thaliana
  • geographic location: Brugg (47.4816806N 8.217547222E)
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe
  • latitude: 47.4817
  • longitude: 8.2176

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sphingomonas sp. Leaf11GCA_001421285contigncbi1735678
66792Sphingomonas sp. Leaf111735678.3wgspatric1735678
66792Sphingomonas sp. Leaf112643221793draftimg1735678

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes71.965no
gram-positiveno97.415no
anaerobicno99.443no
aerobicyes96.171no
halophileno94.083no
spore-formingno94.907no
thermophileno98.026no
glucose-utilyes90.061no
flagellatedno81.539no
glucose-fermentno90.715no

External links

@ref: 23748

culture collection no.: DSM 102739

straininfo link

  • @ref: 90343
  • straininfo: 396642

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23748Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102739Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102739)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90343Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396642.1