Strain identifier

BacDive ID: 13194

Type strain: Yes

Species: Actinoalloteichus hymeniacidonis

Strain history: CIP <- 2006, JCM <- 2005, H. Zhang, Chinese Acad. Sci., Beijing, China: strain HPA177

NCBI tax ID(s): 340345 (species)

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General

@ref: 12334

BacDive-ID: 13194

DSM-Number: 45092

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic

description: Actinoalloteichus hymeniacidonis DSM 45092 is an obligate aerobe, spore-forming, mesophilic bacterium that was isolated from marine sponge Hymeniacidon perleve.

NCBI tax id

  • NCBI tax id: 340345
  • Matching level: species

strain history

@refhistory
12334<- JCM <- H. Zhang; HPA 177
67770H. Zhang HPA177.
120028CIP <- 2006, JCM <- 2005, H. Zhang, Chinese Acad. Sci., Beijing, China: strain HPA177

doi: 10.13145/bacdive13194.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinoalloteichus
  • species: Actinoalloteichus hymeniacidonis
  • full scientific name: Actinoalloteichus hymeniacidonis Zhang et al. 2006

@ref: 12334

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Actinoalloteichus

species: Actinoalloteichus hymeniacidonis

full scientific name: Actinoalloteichus hymeniacidonis Zhang et al. 2006 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no96.756
69480100positive
120028nopositiverod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12334GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
37551MEDIUM 689 - for Actinoalloteichus hymeniacidonisyes
120028CIP Medium 366yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=366

culture temp

@refgrowthtypetemperaturerange
12334positivegrowth28mesophilic
37551positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 120028
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481yes91
69480yes98.654

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H6), MK-9(H8)

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
120028nitrate-reduction17632
120028nitrite-reduction16301

metabolite production

  • @ref: 120028
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
120028oxidase-
120028catalase+1.11.1.6
120028urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120028-+++-+---+---+-+++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120028-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
12334marine sponge Hymeniacidon perleveHymeniacidon perleveDalianChinaCHNAsia
67770Marine sponge (Hymeniacidon perleve)Hymeniacidon perleveDalianChinaCHNAsia
120028Marine, spongeChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Host#Invertebrates (Other)#Porifera (Sponges)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2476.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1336;97_1586;98_1928;99_2476&stattab=map
  • Last taxonomy: Actinoalloteichus
  • 16S sequence: DQ144222
  • Sequence Identity:
  • Total samples: 3811
  • soil counts: 2648
  • aquatic counts: 370
  • animal counts: 458
  • plant counts: 335

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
123341Risk group (German classification)
1200281Risk group (French classification)

Sequence information

16S sequences

  • @ref: 12334
  • description: Actinoalloteichus hymeniacidonis strain HPA177 16S ribosomal RNA gene, partial sequence
  • accession: DQ144222
  • length: 1470
  • database: ena
  • NCBI tax ID: 340345

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinoalloteichus hymeniacidonis HPA177(T) (=DSM 45092(T))GCA_001747425completencbi340345
66792Actinoalloteichus hymeniacidonis DSM 45092GCA_014203365contigncbi340345
66792Actinoalloteichus hymeniacidonis strain DSM 45092340345.5wgspatric340345
66792Actinoalloteichus hymeniacidonis strain HPA177(T) (=DSM 45092(T))340345.3completepatric340345
66792Actinoalloteichus hymeniacidonis DSM 450922863033670draftimg340345
66792Actinoalloteichus hymeniacidonis DSM 45092 Genome sequencing2615840661completeimg340345

GC content

  • @ref: 67770
  • GC-content: 68.1
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes91no
flagellatedno97.55no
gram-positiveyes90.242no
anaerobicno99no
aerobicyes91.824no
halophileno62.165no
spore-formingyes83.673no
glucose-utilyes89.362no
thermophileno96.936no
motileno91.756no
glucose-fermentno88.667no

External links

@ref: 12334

culture collection no.: DSM 45092, CGMCC 4.2500, CIP 109428, JCM 13436, HPA 177, BCRC 16835, NCIMB 14383, NRRL B-24537

straininfo link

  • @ref: 82402
  • straininfo: 295946

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17012552Actinoalloteichus hymeniacidonis sp. nov., an actinomycete isolated from the marine sponge Hymeniacidon perleve.Zhang H, Zheng W, Huang J, Luo H, Jin Y, Zhang W, Liu Z, Huang YInt J Syst Evol Microbiol10.1099/ijs.0.64217-02006Actinomycetales/*classification/genetics/isolation & purification/physiology, Animals, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny25825244Actinoalloteichus hoggarensis sp. nov., an actinomycete isolated from Saharan soil.Boudjelal F, Zitouni A, Bouras N, Schumann P, Sproer C, Sabaou N, Klenk HPInt J Syst Evol Microbiol10.1099/ijs.0.0002162015Actinomycetales/*classification/genetics/isolation & purification, Algeria, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistryGenetics
Genetics28031775Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177(T) isolated from a marine sponge.Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Ruckert CStand Genomic Sci10.1186/s40793-016-0213-32016
Phylogeny28770445Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation.Nouioui I, Ruckert C, Willemse J, van Wezel GP, Klenk HP, Busche T, Kalinowski J, Bredholt H, Zotchev SBAntonie Van Leeuwenhoek10.1007/s10482-017-0920-92017Actinobacteria/chemistry/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Computational Biology/methods, Genes, Bacterial, Genome, Bacterial, Genomics/methods, High-Throughput Nucleotide Sequencing, Metabolomics/methods, Molecular Sequence Annotation, Multigene Family, Phenotype, Phylogeny, Porifera/*microbiology, Secondary Metabolism/geneticsGenetics

Reference

@idauthorscataloguedoi/urltitle
12334Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45092)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45092
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37551Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7168
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82402Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID295946.1StrainInfo: A central database for resolving microbial strain identifiers
120028Curators of the CIPCollection of Institut Pasteur (CIP 109428)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109428