Archive BacDiveID:10.13145/bacdive131938.20230509.8.1

Strain identifier

BacDive ID: 131938

Type strain:

Species: Sphingomonas sp.

Strain Designation: Root1294

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root1294 <- Y. Bai

NCBI tax ID(s): 28214 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23730

BacDive-ID: 131938

DSM-Number: 102535

keywords: genome sequence, Bacteria, mesophilic

description: Sphingomonas sp. Root1294 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

NCBI tax id

NCBI tax id: 28214
Matching level: species

strain history

@ref: 23730
history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root1294 <- Y. Bai

doi: 10.13145/bacdive131938.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas sp.
full scientific name: Sphingomonas Yabuuchi et al. 1990

@ref: 23730

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Pseudomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas sp.

full scientific name: Sphingomonas sp.

strain designation: Root1294

type strain: no

Culture and growth conditions

culture medium

@ref: 23730
name: R2A MEDIUM (DSMZ Medium 830)
growth: yes
link: https://mediadive.dsmz.de/medium/830
composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@ref: 23730
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23730
sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
host species: Arabidopsis thaliana
geographic location: Cologne (50.958N 6.856E)
country: Germany
origin.country: DEU
continent: Europe
latitude: 50.958
longitude: 6.856

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Sphingomonas sp. Root1294	GCA_001426255	scaffold	ncbi	1736447
66792	Sphingomonas sp. Root1294	1736447.3	wgs	patric	1736447
66792	Sphingomonas sp. Root1294	2643221671	draft	img	1736447

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	no	87.197	no
gram-positive	no	96.588	no
anaerobic	no	99.135	no
aerobic	yes	95.857	no
halophile	no	94.932	no
spore-forming	no	95.499	no
thermophile	no	96.835	yes
glucose-util	yes	88.339	no
motile	yes	75.953	no
glucose-ferment	no	92.183	no

External links

@ref: 23730

culture collection no.: DSM 102535

straininfo link

@ref: 90325
straininfo: 407405

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23730	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102535	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102535)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90325	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID407405.1