Strain identifier

BacDive ID: 131937

Type strain: No

Species: Sphingomonas sp.

Strain Designation: Root720

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root720 <- Y. Bai

NCBI tax ID(s): 28214 (species)

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General

@ref: 23729

BacDive-ID: 131937

DSM-Number: 102539

keywords: genome sequence, Bacteria, mesophilic

description: Sphingomonas sp. Root720 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

NCBI tax id

  • NCBI tax id: 28214
  • Matching level: species

strain history

  • @ref: 23729
  • history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root720 <- Y. Bai

doi: 10.13145/bacdive131937.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas sp.
  • full scientific name: Sphingomonas Yabuuchi et al. 1990

@ref: 23729

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Pseudomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas sp.

full scientific name: Sphingomonas sp.

strain designation: Root720

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23729
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 23729
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23729
  • sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
  • host species: Arabidopsis thaliana
  • geographic location: Cologne (50.958N 6.856E)
  • country: Germany
  • origin.country: DEU
  • continent: Europe
  • latitude: 50.958
  • longitude: 6.856

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sphingomonas sp. Root720GCA_001428605scaffoldncbi1736595
66792Sphingomonas sp. Root7201736595.3wgspatric1736595
66792Sphingomonas sp. Root7202643221606draftimg1736595

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno89.383no
gram-positiveno96.399no
anaerobicno99.168no
aerobicyes96.286no
halophileno94.928no
spore-formingno95.682no
glucose-utilyes89.048no
motileyes75.288no
thermophileno96.717yes
glucose-fermentno92.071no

External links

@ref: 23729

culture collection no.: DSM 102539

straininfo link

  • @ref: 90324
  • straininfo: 404620

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23729Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102539Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102539)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90324Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404620.1