Strain identifier

BacDive ID: 131929

Type strain: No

Species: Salmonella enterica subsp. enterica

Strain Designation: S23

Strain history: <- C. G. T. Rensing, University of Copenhagen; S23 <- Y. Qin <- H. Hasman, Danish Technical Institute

NCBI tax ID(s): 59201 (subspecies)

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General

@ref: 23721

BacDive-ID: 131929

DSM-Number: 101476

keywords: genome sequence, Bacteria, mesophilic

description: Salmonella enterica subsp. enterica S23 is a mesophilic bacterium that was isolated from copper fed pigs.

NCBI tax id

  • NCBI tax id: 59201
  • Matching level: subspecies

strain history

  • @ref: 23721
  • history: <- C. G. T. Rensing, University of Copenhagen; S23 <- Y. Qin <- H. Hasman, Danish Technical Institute

doi: 10.13145/bacdive131929.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica subsp. enterica
  • full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

  • synonyms

    • @ref: 20215
    • synonym: Salmonella choleraesuis subsp. choleraesuis

@ref: 23721

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica subsp. enterica

full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

strain designation: S23

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
23721COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23721NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 23721
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
23721-+++++---+-+++++-+-+-
23721-+++++---+-+++++-+-+-

Isolation, sampling and environmental information

isolation

  • @ref: 23721
  • sample type: copper fed pigs
  • country: Denmark
  • origin.country: DNK
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Geologic
#Host#Mammals#Suidae (Pig,Swine)

Safety information

risk assessment

  • @ref: 23721
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica S23GCA_016018625contigncbi28901
66792Salmonella enterica S23GCA_020003365scaffoldncbi28901
66792Salmonella enterica subsp. enterica serovar Typhimurium S23GCA_000784235contigncbi90371
66792Salmonella enterica subsp. enterica serovar Typhimurium S2390371.100wgspatric90371

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes53.631no
gram-positiveno98.661no
anaerobicno91.946no
aerobicyes70.305no
halophileno93.103no
spore-formingno93.647no
motileyes90.147no
thermophileno98.676yes
glucose-utilyes92.78no
glucose-fermentyes93.251yes

External links

@ref: 23721

culture collection no.: DSM 101476

straininfo link

  • @ref: 90316
  • straininfo: 407876

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23721Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101476Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101476)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
90316Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407876.1