Archive BacDiveID:10.13145/bacdive131913.20230509.8.1

Strain identifier

BacDive ID: 131913

Type strain:

Species: Pseudoxanthomonas sp.

Strain Designation: Root630

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root630 <- Y. Bai

NCBI tax ID(s): 1871049 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23705

BacDive-ID: 131913

DSM-Number: 102509

keywords: genome sequence, Bacteria, mesophilic

description: Pseudoxanthomonas sp. Root630 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

NCBI tax id

NCBI tax id: 1871049
Matching level: species

strain history

@ref: 23705
history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root630 <- Y. Bai

doi: 10.13145/bacdive131913.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Lysobacterales
family: Lysobacteraceae
genus: Pseudoxanthomonas
species: Pseudoxanthomonas sp.
full scientific name: Pseudoxanthomonas Finkmann et al. 2000

@ref: 23705

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Lysobacteraceae

genus: Pseudoxanthomonas

species: Pseudoxanthomonas sp.

full scientific name: Pseudoxanthomonas sp.

strain designation: Root630

type strain: no

Culture and growth conditions

culture medium

@ref: 23705
name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
growth: yes
link: https://mediadive.dsmz.de/medium/535
composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@ref: 23705
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23705
sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
host species: Arabidopsis thaliana
geographic location: Cologne (50.958N 6.856E)
country: Germany
origin.country: DEU
continent: Europe
latitude: 50.958
longitude: 6.856

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Pseudoxanthomonas sp. Root630	GCA_001427585	scaffold	ncbi	1736574
66792	Pseudoxanthomonas sp. Root630	1736574.3	wgs	patric	1736574
66792	Pseudoxanthomonas sp. Root630	2643221579	draft	img	1736574

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	no	82.52	no
gram-positive	no	98.548	no
anaerobic	no	98.038	no
aerobic	yes	91.81	no
halophile	no	97.136	no
spore-forming	no	97.021	no
thermophile	no	99.075	no
glucose-util	yes	89.586	no
motile	yes	83.913	no
glucose-ferment	no	90.524	no

External links

@ref: 23705

culture collection no.: DSM 102509

straininfo link

@ref: 90300
straininfo: 399799

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23705	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102509	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102509)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90300	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID399799.1