Strain identifier

BacDive ID: 13191

Type strain: No

Species: Actinoalloteichus caeruleus

Strain history: KCC S-0014 <-- Y. Okami <-- T. Yamaguchi <-- NRRL B-1623.

NCBI tax ID(s): 65497 (species)

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General

@ref: 9314

BacDive-ID: 13191

DSM-Number: 40103

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Actinoalloteichus caeruleus DSM 40103 is a mesophilic bacterium that produces antibiotic compounds and was isolated from rice straw.

NCBI tax id

  • NCBI tax id: 65497
  • Matching level: species

strain history

@refhistory
9314<- E.B. Shirling, ISP <- E. Baldacci, IPV 930
67770KCC S-0014 <-- Y. Okami <-- T. Yamaguchi <-- NRRL B-1623.

doi: 10.13145/bacdive13191.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinoalloteichus
  • species: Actinoalloteichus caeruleus
  • full scientific name: Actinoalloteichus caeruleus (Baldacci 1944) Teo et al. 2021

  • synonyms

    @refsynonym
    20215Actinomyces caeruleus
    20215Actinoalloteichus cyanogriseus
    20215Streptomyces caeruleus

@ref: 9314

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Actinoalloteichus

species: Actinoalloteichus cyanogriseus

full scientific name: Actinoalloteichus cyanogriseus Tamura et al. 2000

type strain: no

Morphology

multimedia

  • @ref: 9314
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40103.jpg
  • caption: Medium 65 pH8 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 9314
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9314positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9314caerulomycin
20216Caerulomycin

Isolation, sampling and environmental information

isolation

@refsample type
9314rice straw
67770Rice straw

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body Product#Plant#Straw

taxonmaps

  • @ref: 69479
  • File name: preview.99_5097.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1336;97_3030;98_3805;99_5097&stattab=map
  • Last taxonomy: Actinoalloteichus
  • 16S sequence: HG917901
  • Sequence Identity:
  • Total samples: 1669
  • soil counts: 1111
  • aquatic counts: 125
  • animal counts: 269
  • plant counts: 164

Safety information

risk assessment

  • @ref: 9314
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinoalloteichus cyanogriseus gene for 16S rRNA, partial sequence, strain: NBRC 13344AB1843451470ena65497
20218Actinoalloteichus cyanogriseus strain AS 4.1372 16S ribosomal RNA gene, partial sequenceFJ4061101357ena65497
20218Actinoalloteichus cyanogriseus partial 16S rRNA gene, strain DSM 40103HG9179011488ena65497
67770Streptomyces caeruleus strain NRRL B-2194 16S ribosomal RNA gene, partial sequenceEF1786751481ena2893586

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
67770Actinoalloteichus caeruleus NRRL ISP-5103GCA_000716095scaffoldncbi2893586
67770Actinoalloteichus caeruleus NRRL B-2194GCA_000718005contigncbi2893586

GC content

  • @ref: 67770
  • GC-content: 72.5
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.459no
flagellatedno97.397no
gram-positiveyes92.94no
anaerobicno98.996no
halophileyes55.363no
spore-formingyes76.66no
thermophileno95.883no
glucose-utilyes83.659no
aerobicyes93.208no
glucose-fermentno90.635no

External links

@ref: 9314

culture collection no.: DSM 40103, AS 4.1372, ATCC 27421, CBS 645.72, IFO 13344, ISP 5103, KCC S-0181, KCC S-0730, NBRC 13344, RIA 1305, IPV 930, JCM 4014, BCRC 13659, CGMCC 4.1372, IMET 40622, JCM 4730, MTCC 4995, NBRC 100143, NRRL B-1623, NRRL B-2194, NRRL ISP-5103, RIA 755, VKM Ac-1918

straininfo link

  • @ref: 82399
  • straininfo: 13389

literature

  • topic: Phylogeny
  • Pubmed-ID: 19060064
  • title: Reclassification of Streptomyces caeruleus as a synonym of Actinoalloteichus cyanogriseus and reclassification of Streptomyces spheroides and Streptomyces laceyi as later synonyms of Streptomyces niveus.
  • authors: Tamura T, Ishida Y, Otoguro M, Hatano K, Labeda D, Price NP, Suzuki K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65560-0
  • year: 2008
  • mesh: Actinomycetales/chemistry/*classification/genetics, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species Specificity, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Streptomyces/chemistry/*classification/genetics
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9314Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40103)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40103
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82399Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13389.1StrainInfo: A central database for resolving microbial strain identifiers