Strain identifier
BacDive ID: 131888
Type strain:
Species: Pseudomonas putida
Strain Designation: S13.1.2
Strain history: <- T. M. Chong, Microbiome Laboratory, University of Malaya; S13.1.2 <- S. P. Gan <- K. G. Chan
NCBI tax ID(s): 303 (species)
General
@ref: 23680
BacDive-ID: 131888
DSM-Number: 102034
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Pseudomonas putida S13.1.2 is a mesophilic human pathogen that was isolated from vineyard soil.
NCBI tax id
- NCBI tax id: 303
- Matching level: species
strain history
- @ref: 23680
- history: <- T. M. Chong, Microbiome Laboratory, University of Malaya; S13.1.2 <- S. P. Gan <- K. G. Chan
doi: 10.13145/bacdive131888.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas putida
- full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacillus putidus 20215 Arthrobacter siderocapsulatus
@ref: 23680
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas putida
full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895
strain designation: S13.1.2
type strain: no
Culture and growth conditions
culture medium
- @ref: 23680
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 23680
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23680
- sample type: vineyard soil
- geographic location: Riquewihr
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | #Vineyard |
#Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 23680
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Pseudomonas putida S13.1.2 | GCA_000498395 | complete | ncbi | 1384061 |
66792 | Pseudomonas putida S13.1.2 | 1384061.3 | wgs | patric | 1384061 |
66792 | Pseudomonas putida S13.1.2 | 2582580897 | draft | img | 1384061 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 93.062 | no |
motile | yes | 93.062 | no |
flagellated | yes | 84.465 | no |
flagellated | yes | 84.465 | no |
gram-positive | no | 98.524 | no |
gram-positive | no | 98.524 | no |
anaerobic | no | 98.309 | no |
anaerobic | no | 98.309 | no |
aerobic | yes | 94.875 | no |
aerobic | yes | 94.875 | no |
halophile | no | 84.943 | no |
halophile | no | 84.943 | no |
spore-forming | no | 95.581 | no |
spore-forming | no | 95.581 | no |
thermophile | no | 99.904 | yes |
thermophile | no | 99.904 | yes |
glucose-util | yes | 91.132 | no |
glucose-util | yes | 91.132 | no |
glucose-ferment | no | 88.6 | no |
glucose-ferment | no | 88.6 | no |
External links
@ref: 23680
culture collection no.: DSM 102034
straininfo link
- @ref: 90276
- straininfo: 399308
literature
- Pubmed-ID: 27730570
- title: Comprehensive genomic and phenotypic metal resistance profile of Pseudomonas putida strain S13.1.2 isolated from a vineyard soil.
- authors: Chong TM, Yin WF, Chen JW, Mondy S, Grandclement C, Faure D, Dessaux Y, Chan KG
- journal: AMB Express
- DOI: 10.1186/s13568-016-0269-x
- year: 2016
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
23680 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102034 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102034) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
90276 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399308.1 |