Strain identifier

BacDive ID: 131888

Type strain: No

Species: Pseudomonas putida

Strain Designation: S13.1.2

Strain history: <- T. M. Chong, Microbiome Laboratory, University of Malaya; S13.1.2 <- S. P. Gan <- K. G. Chan

NCBI tax ID(s): 303 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23680

BacDive-ID: 131888

DSM-Number: 102034

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Pseudomonas putida S13.1.2 is a mesophilic human pathogen that was isolated from vineyard soil.

NCBI tax id

  • NCBI tax id: 303
  • Matching level: species

strain history

  • @ref: 23680
  • history: <- T. M. Chong, Microbiome Laboratory, University of Malaya; S13.1.2 <- S. P. Gan <- K. G. Chan

doi: 10.13145/bacdive131888.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas putida
  • full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Bacillus putidus
    20215Arthrobacter siderocapsulatus

@ref: 23680

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas putida

full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895

strain designation: S13.1.2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23680
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 23680
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23680
  • sample type: vineyard soil
  • geographic location: Riquewihr
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Vineyard
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 23680
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas putida S13.1.2GCA_000498395completencbi1384061
66792Pseudomonas putida S13.1.21384061.3wgspatric1384061
66792Pseudomonas putida S13.1.22582580897draftimg1384061

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes93.062no
motileyes93.062no
flagellatedyes84.465no
flagellatedyes84.465no
gram-positiveno98.524no
gram-positiveno98.524no
anaerobicno98.309no
anaerobicno98.309no
aerobicyes94.875no
aerobicyes94.875no
halophileno84.943no
halophileno84.943no
spore-formingno95.581no
spore-formingno95.581no
thermophileno99.904yes
thermophileno99.904yes
glucose-utilyes91.132no
glucose-utilyes91.132no
glucose-fermentno88.6no
glucose-fermentno88.6no

External links

@ref: 23680

culture collection no.: DSM 102034

straininfo link

  • @ref: 90276
  • straininfo: 399308

literature

  • Pubmed-ID: 27730570
  • title: Comprehensive genomic and phenotypic metal resistance profile of Pseudomonas putida strain S13.1.2 isolated from a vineyard soil.
  • authors: Chong TM, Yin WF, Chen JW, Mondy S, Grandclement C, Faure D, Dessaux Y, Chan KG
  • journal: AMB Express
  • DOI: 10.1186/s13568-016-0269-x
  • year: 2016

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23680Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102034Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102034)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90276Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399308.1