Strain identifier
BacDive ID: 131886
Type strain: 
Species: Pseudomonas aeruginosa
Strain Designation: H1l
Strain history: <- X. Y. Chan, Univ. of Malaya, Kuala Lumpur, Malaysia; H1l
NCBI tax ID(s): 287 (species)
version 8.1 (current version)
General
@ref: 23678
BacDive-ID: 131886
DSM-Number: 103301
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen
description: Pseudomonas aeruginosa H1l is a mesophilic human pathogen that was isolated from digestive fluid of carnivorous plant Nepenthes.
NCBI tax id
- NCBI tax id: 287
- Matching level: species
strain history
- @ref: 23678
- history: <- X. Y. Chan, Univ. of Malaya, Kuala Lumpur, Malaysia; H1l
doi: 10.13145/bacdive131886.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas aeruginosa
- full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium aeruginosum
@ref: 23678
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas aeruginosa
full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900
strain designation: H1l
type strain: no
Culture and growth conditions
culture medium
- @ref: 23678
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 23678
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23678
- sample type: digestive fluid of carnivorous plant Nepenthes
- host species: Nepenthes
- geographic location: Pahang, Mossy Forest (N 04°31’, E 101°22’)
- country: Malaysia
- origin.country: MYS
- continent: Asia
- latitude: 4.5167
- longitude: 101.367
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body Product | #Plant | #Digestive fluid |
taxonmaps
- @ref: 69479
- File name: preview.99_42.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_36;97_37;98_40;99_42&stattab=map
- Last taxonomy: Pseudomonas aeruginosa
- 16S sequence: KF557594
- Sequence Identity:
- Total samples: 22757
- soil counts: 1669
- aquatic counts: 5046
- animal counts: 14748
- plant counts: 1294
Safety information
risk assessment
- @ref: 23678
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23678
- description: Pseudomonas aeruginosa strain H1l 16S ribosomal RNA gene, partial sequence
- accession: KF557594
- length: 1506
- database: ena
- NCBI tax ID: 287
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudomonas aeruginosa H1l | GCA_000633495 | contig | ncbi | 1416756 |
| 66792 | Pseudomonas aeruginosa H1l | 1416756.3 | wgs | patric | 1416756 |
| 66792 | Pseudomonas aeruginosa H1l | 2579778545 | draft | img | 1416756 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 90.186 | no |
| gram-positive | no | 98.379 | no |
| anaerobic | no | 98.612 | no |
| halophile | no | 90.405 | no |
| spore-forming | no | 93.566 | no |
| thermophile | no | 99.8 | yes |
| glucose-util | yes | 90.369 | no |
| aerobic | yes | 94.163 | no |
| flagellated | yes | 85.739 | no |
| glucose-ferment | no | 90.015 | no |
External links
@ref: 23678
culture collection no.: DSM 103301
straininfo link
- @ref: 90274
- straininfo: 401200
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23678 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103301 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103301) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 90274 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401200.1 |