Strain identifier
BacDive ID: 13184
Type strain: 
Species: Halopseudomonas bauzanensis
Strain Designation: BZ93
Strain history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; BZ93
NCBI tax ID(s): 653930 (species)
version 8.1 (current version)
General
@ref: 16399
BacDive-ID: 13184
DSM-Number: 22558
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Halopseudomonas bauzanensis BZ93 is a mesophilic, motile bacterium that was isolated from soil contaminated with hydrocarbon and heavy metal from an industrial site.
NCBI tax id
- NCBI tax id: 653930
- Matching level: species
strain history
- @ref: 16399
- history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; BZ93
doi: 10.13145/bacdive13184.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Halopseudomonas
- species: Halopseudomonas bauzanensis
- full scientific name: Halopseudomonas bauzanensis (Zhang et al. 2011) Rudra and Gupta 2021
synonyms
@ref synonym 20215 Neopseudomonas bauzanensis 20215 Pseudomonas bauzanensis
@ref: 16399
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas bauzanensis
full scientific name: Pseudomonas bauzanensis Zhang et al. 2011
strain designation: BZ93
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.685 | |
| 69480 | 99.998 | negative |
colony morphology
- @ref: 16399
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 16399
- name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830c
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 16399
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.998 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | + | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | - | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16399 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 16399
- sample type: soil contaminated with hydrocarbon and heavy metal from an industrial site
- geographic location: South Tyrol, Bozen
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | #Heavy metal |
| #Engineered | #Industrial | |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_1883.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_1057;97_1235;98_1483;99_1883&stattab=map
- Last taxonomy: Pseudomonas bauzanensis subclade
- 16S sequence: GQ161991
- Sequence Identity:
- Total samples: 339
- soil counts: 105
- aquatic counts: 128
- animal counts: 94
- plant counts: 12
Safety information
risk assessment
- @ref: 16399
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16399
- description: Pseudomonas bauzanensis strain BZ93 16S ribosomal RNA gene, partial sequence
- accession: GQ161991
- length: 1529
- database: ena
- NCBI tax ID: 653930
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halopseudomonas bauzanensis DSM 22558 | GCA_900111225 | scaffold | ncbi | 653930 |
| 66792 | Halopseudomonas bauzanensis CGMCC 1.9095 | GCA_900114735 | scaffold | ncbi | 653930 |
| 66792 | Pseudomonas bauzanensis strain CGMCC 1.9095 | 653930.11 | wgs | patric | 653930 |
| 66792 | Pseudomonas bauzanensis strain DSM 22558 | 653930.5 | wgs | patric | 653930 |
| 66792 | Pseudomonas bauzanensis CGMCC 1.9095 | 2619618872 | draft | img | 653930 |
| 66792 | Pseudomonas bauzanensis LMG 26048 | 2671180106 | draft | img | 653930 |
GC content
- @ref: 16399
- GC-content: 61.8
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 91.431 | no |
| flagellated | yes | 84.36 | no |
| gram-positive | no | 98.884 | no |
| anaerobic | no | 97.385 | no |
| aerobic | yes | 88.145 | no |
| halophile | no | 65.013 | no |
| spore-forming | no | 96.42 | no |
| glucose-ferment | no | 91.811 | yes |
| thermophile | no | 99.66 | yes |
| glucose-util | no | 81.131 | yes |
External links
@ref: 16399
culture collection no.: DSM 22558, CGMCC 1.9095, LMG 26048
straininfo link
- @ref: 82392
- straininfo: 370919
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16399 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22558) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22558 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 68369 | Automatically annotated from API 20NE | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 82392 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID370919.1 | StrainInfo: A central database for resolving microbial strain identifiers |