Strain identifier

BacDive ID: 131805

Type strain: No

Species: Microbacterium sp.

Strain Designation: Leaf320

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf320 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 51671 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23600

BacDive-ID: 131805

DSM-Number: 102661

keywords: genome sequence, Bacteria, mesophilic

description: Microbacterium sp. Leaf320 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

  • NCBI tax id: 51671
  • Matching level: species

strain history

  • @ref: 23600
  • history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf320 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131805.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium sp.
  • full scientific name: Microbacterium Orla-Jensen 1919 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Aureobacterium

@ref: 23600

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium sp.

full scientific name: Microbacterium sp.

strain designation: Leaf320

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23600
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 23600
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23600
  • sample type: leaf of Arabidopsis thaliana, wild-type genotype
  • host species: Arabidopsis thaliana
  • geographic location: Hoengg (47.4090306N 8.470169444E)
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe
  • latitude: 47.409
  • longitude: 8.4702

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Microbacterium sp. Leaf320GCA_001423485contigncbi1736334
66792Microbacterium sp. Leaf3201736334.3wgspatric1736334
66792Microbacterium sp. Leaf3202643221894draftimg1736334

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes64.114no
gram-positiveyes90.861no
anaerobicno99.556no
aerobicyes93.845no
halophileno90.665no
spore-formingno91.408no
thermophileno99.725yes
glucose-utilyes83.873no
flagellatedno91.403no
glucose-fermentno90.937no

External links

@ref: 23600

culture collection no.: DSM 102661

straininfo link

  • @ref: 90196
  • straininfo: 399518

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23600Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102661Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102661)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90196Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399518.1