Strain identifier

BacDive ID: 131801

Type strain: No

Species: Microbacterium sp.

Strain Designation: Leaf203

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf203 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 51671 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23596

BacDive-ID: 131801

DSM-Number: 102657

keywords: genome sequence, Bacteria, mesophilic

description: Microbacterium sp. Leaf203 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

  • NCBI tax id: 51671
  • Matching level: species

strain history

  • @ref: 23596
  • history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf203 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131801.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium sp.
  • full scientific name: Microbacterium Orla-Jensen 1919 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Aureobacterium

@ref: 23596

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium sp.

full scientific name: Microbacterium sp.

strain designation: Leaf203

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23596
  • name: PP-MEDIUM (DSMZ Medium 513)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/513
  • composition: Name: PP-MEDIUM (DSMZ Medium 513) Composition: Agar 15.0 g/l Polypeptone 10.0 g/l Yeast extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Distilled water

culture temp

  • @ref: 23596
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23596
  • sample type: leaf of Arabidopsis thaliana, wild-type genotype
  • host species: Arabidopsis thaliana
  • geographic location: Brugg (47.4816806N 8.217547222E)
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe
  • latitude: 47.4817
  • longitude: 8.2176

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Microbacterium sp. Leaf203GCA_001421275scaffoldncbi1735677
66792Microbacterium sp. Leaf2031735677.3wgspatric1735677
66792Microbacterium sp. Leaf2032643221745draftimg1735677

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno94.406no
gram-positiveyes92.602no
anaerobicno99.639no
aerobicyes95.295no
halophileno89.344no
spore-formingno95.582no
thermophileno98.874yes
glucose-utilyes81.356no
motileyes50.853no
glucose-fermentno90.695no

External links

@ref: 23596

culture collection no.: DSM 102657

straininfo link

  • @ref: 90192
  • straininfo: 404720

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23596Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102657Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102657)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90192Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404720.1