Strain identifier

BacDive ID: 13180

Type strain: Yes

Species: Pseudomonas taiwanensis

Strain Designation: CMS

Strain history: <- F.-L. Lee, BCRC <- M.-S. Chang

NCBI tax ID(s): 1292030 (strain), 470150 (species)

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General

@ref: 15590

BacDive-ID: 13180

DSM-Number: 21245

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Pseudomonas taiwanensis CMS is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

NCBI tax idMatching level
1292030strain
470150species

strain history

  • @ref: 15590
  • history: <- F.-L. Lee, BCRC <- M.-S. Chang

doi: 10.13145/bacdive13180.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas taiwanensis
  • full scientific name: Pseudomonas taiwanensis Wang et al. 2010

@ref: 15590

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas taiwanensis

full scientific name: Pseudomonas taiwanensis Wang et al. 2010

strain designation: CMS

type strain: yes

Morphology

cell morphology

  • @ref: 29519
  • gram stain: negative
  • cell length: 1-2.2 µm
  • cell width: 0.7-1 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 29519
  • production: no

Culture and growth conditions

culture medium

  • @ref: 15590
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15590positivegrowth28mesophilic
29519positivegrowth05-42
29519positiveoptimum30-37mesophilic

culture pH

@refabilitytypepHPH range
29519positivegrowth04-09alkaliphile
29519positiveoptimum06-08

Physiology and metabolism

oxygen tolerance

  • @ref: 29519
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29519
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29519NaClpositivegrowth0-6 %
29519NaClpositiveoptimum0-6 %

observation

  • @ref: 29519
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2951927689decanoate+carbon source
2951924265gluconate+carbon source
2951925115malate+carbon source
2951918401phenylacetate+carbon source
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
29519catalase+1.11.1.6
29519cytochrome oxidase+1.9.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
15590--++----+-----++-++++
15590---+----+-----++-++++

Isolation, sampling and environmental information

isolation

  • @ref: 15590
  • sample type: soil
  • geographic location: Taipei, Tamsui, Tamkang University
  • country: Taiwan
  • origin.country: TWN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_239.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_203;99_239&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: EU103629
  • Sequence Identity:
  • Total samples: 2133
  • soil counts: 368
  • aquatic counts: 543
  • animal counts: 799
  • plant counts: 423

Safety information

risk assessment

  • @ref: 15590
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15590
  • description: Pseudomonas taiwanensis strain BCRC 17751 16S ribosomal RNA gene, partial sequence
  • accession: EU103629
  • length: 1469
  • database: ena
  • NCBI tax ID: 1292030

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas taiwanensis DSM 21245GCA_000425785scaffoldncbi1292030
66792Pseudomonas taiwanensis DSM 212451292030.3wgspatric1292030
66792Pseudomonas taiwanensis DSM 212452523533561draftimg1292030

GC content

  • @ref: 15590
  • GC-content: 62.7

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes92.497yes
flagellatedyes85.936no
gram-positiveno98.504yes
anaerobicno98.175yes
aerobicyes93.448no
halophileno86.69no
spore-formingno95.922yes
thermophileno99.896yes
glucose-utilyes91.623yes
glucose-fermentno91.031no

External links

@ref: 15590

culture collection no.: DSM 21245, BCRC 17751

straininfo link

  • @ref: 82388
  • straininfo: 370646

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19854877Pseudomonas taiwanensis sp. nov., isolated from soil.Wang LT, Tai CJ, Wu YC, Chen YB, Lee FL, Wang SLInt J Syst Evol Microbiol10.1099/ijs.0.014779-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, Pseudomonas/*classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/genetics, *Soil MicrobiologyMetabolism
Phylogeny30566068Pseudomonas sichuanensis sp. nov., isolated from hospital sewage.Qin J, Hu Y, Feng Y, Xaioju L, Zong ZInt J Syst Evol Microbiol10.1099/ijsem.0.0031882018Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Hospitals, Nucleic Acid Hybridization, *Phylogeny, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiologyTranscriptome
Genetics32974501High-quality draft genome sequences of Pseudomonas monteilii DSM 14164(T), Pseudomonas mosselii DSM 17497(T), Pseudomonas plecoglossicida DSM 15088(T), Pseudomonas taiwanensis DSM 21245(T) and Pseudomonas vranovensis DSM 16006(T): taxonomic considerations.Pena A, Busquets A, Gomila M, Mulet M, Gomila RM, Garcia-Valdes E, Reddy TBK, Huntemann M, Varghese N, Ivanova N, Chen IM, Goker M, Woyke T, Klenk HP, Kyrpides N, Lalucat JAccess Microbiol10.1099/acmi.0.0000672019

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15590Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21245)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21245
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29519Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2591628776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82388Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID370646.1StrainInfo: A central database for resolving microbial strain identifiers