Strain identifier

BacDive ID: 131798

Type strain: No

Species: Microbacterium sp.

Strain Designation: Root53

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root53 <- Y. Bai

NCBI tax ID(s): 51671 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23593

BacDive-ID: 131798

DSM-Number: 102463

keywords: genome sequence, Bacteria, mesophilic

description: Microbacterium sp. Root53 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

NCBI tax id

  • NCBI tax id: 51671
  • Matching level: species

strain history

  • @ref: 23593
  • history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root53 <- Y. Bai

doi: 10.13145/bacdive131798.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium sp.
  • full scientific name: Microbacterium Orla-Jensen 1919 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Aureobacterium

@ref: 23593

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium sp.

full scientific name: Microbacterium sp.

strain designation: Root53

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23593
  • name: PP-MEDIUM (DSMZ Medium 513)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/513
  • composition: Name: PP-MEDIUM (DSMZ Medium 513) Composition: Agar 15.0 g/l Polypeptone 10.0 g/l Yeast extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Distilled water

culture temp

  • @ref: 23593
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23593
  • sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
  • host species: Arabidopsis thaliana
  • geographic location: Cologne (50.958N 6.856E)
  • country: Germany
  • origin.country: DEU
  • continent: Europe
  • latitude: 50.958
  • longitude: 6.856

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Microbacterium sp. Root53GCA_001426925contigncbi1736553
66792Microbacterium sp. Root531736553.3wgspatric1736553
66792Microbacterium sp. Root532643221546draftimg1736553

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno90.962no
gram-positiveyes94.362no
anaerobicno99.449no
aerobicyes91.526no
halophileno86.715no
spore-formingno93.993no
thermophileno96.452yes
glucose-utilyes84.269no
flagellatedno97.608no
glucose-fermentno90.655no

External links

@ref: 23593

culture collection no.: DSM 102463

straininfo link

  • @ref: 90189
  • straininfo: 406216

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23593Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102463Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102463)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90189Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406216.1