Strain identifier
BacDive ID: 13176
Type strain: 
Species: Halopseudomonas pelagia
Strain Designation: CL-AP6
Strain history: B. C. Cho CL-AP6.
NCBI tax ID(s): 553151 (species)
version 8.1 (current version)
General
@ref: 17924
BacDive-ID: 13176
DSM-Number: 25163
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Halopseudomonas pelagia CL-AP6 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from antarctic green alga Pyramimonas gelidicola.
NCBI tax id
- NCBI tax id: 553151
- Matching level: species
strain history
| @ref | history |
|---|---|
| 17924 | <- JCM <- B. C. Cho, Research Institute of Oceanography, Seoul National University; CL-AP6 |
| 67770 | B. C. Cho CL-AP6. |
doi: 10.13145/bacdive13176.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Halopseudomonas
- species: Halopseudomonas pelagia
- full scientific name: Halopseudomonas pelagia (Hwang et al. 2009) Rudra and Gupta 2021
synonyms
@ref synonym 20215 Neopseudomonas pelagia 20215 Pseudomonas pelagia
@ref: 17924
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas pelagia
full scientific name: Pseudomonas pelagia Hwang et al. 2009
strain designation: CL-AP6
type strain: yes
Morphology
cell morphology
- @ref: 29181
- gram stain: negative
- cell length: 1.9 µm
- cell width: 0.45 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 29181
- production: no
multimedia
- @ref: 17924
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25163.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 17924
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 17924 | positive | growth | 25 | mesophilic |
| 29181 | positive | growth | 04-33 | |
| 29181 | positive | optimum | 25 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29181 | positive | growth | 6.5-9.1 | alkaliphile |
| 29181 | positive | optimum | 7.5-8.1 |
Physiology and metabolism
oxygen tolerance
- @ref: 29181
- oxygen tolerance: aerobe
spore formation
- @ref: 29181
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29181 | NaCl | positive | growth | 0.5-8 % |
| 29181 | NaCl | positive | optimum | 01-02 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29181 | 17234 | glucose | + | carbon source |
| 29181 | 25017 | leucine | + | carbon source |
| 29181 | 15361 | pyruvate | + | carbon source |
| 29181 | 53424 | tween 20 | + | carbon source |
| 29181 | 53423 | tween 40 | + | carbon source |
| 29181 | 53425 | tween 60 | + | carbon source |
| 29181 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29181 | acid phosphatase | + | 3.1.3.2 |
| 29181 | alkaline phosphatase | + | 3.1.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | continent |
|---|---|---|---|
| 17924 | antarctic green alga Pyramimonas gelidicola | Pyramimonas gelidicola | Australia and Oceania |
| 67770 | Culture of the Antarctic green alga, Pyramimonas gelidicola | Pyramimonas gelidicola |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Algae | #Green algae |
| #Condition | #Psychrophilic (<10°C) | |
| #Climate | #Cold | #Polar |
Safety information
risk assessment
- @ref: 17924
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 29181 | Pseudomonas pelagia strain CL-AP6 16S ribosomal RNA gene, partial sequence | EU888911 | 1460 | nuccore | 553151 |
| 17924 | EU88891 | ena |
Genome sequences
- @ref: 67770
- description: Halopseudomonas pelagia CL-AP6
- accession: GCA_000410875
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1323663
GC content
| @ref | GC-content | method |
|---|---|---|
| 17924 | 59.1 | |
| 67770 | 59.1 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 90.691 | yes |
| flagellated | yes | 92.607 | no |
| gram-positive | no | 98.449 | no |
| anaerobic | no | 97.385 | yes |
| aerobic | yes | 92.99 | no |
| halophile | yes | 57.41 | no |
| spore-forming | no | 96.217 | yes |
| thermophile | no | 99.748 | yes |
| glucose-util | yes | 50.91 | yes |
| glucose-ferment | no | 89.83 | no |
External links
@ref: 17924
culture collection no.: DSM 25163, JCM 15562, KCCM 90073
straininfo link
- @ref: 82384
- straininfo: 297192
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 17924 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25163) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25163 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 29181 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25605 | 28776041 | ||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
| 82384 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297192.1 | StrainInfo: A central database for resolving microbial strain identifiers |