Strain identifier

BacDive ID: 131741

Type strain: No

Species: Lysobacter sp.

Strain Designation: Root76

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root76 <- Y. Bai

NCBI tax ID(s): 72226 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23537

BacDive-ID: 131741

DSM-Number: 102441

keywords: genome sequence, Bacteria, mesophilic

description: Lysobacter sp. Root76 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

NCBI tax id

  • NCBI tax id: 72226
  • Matching level: species

strain history

  • @ref: 23537
  • history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root76 <- Y. Bai

doi: 10.13145/bacdive131741.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Lysobacter
  • species: Lysobacter sp.
  • full scientific name: Lysobacter Christensen and Cook 1978 (Approved Lists 1980)

@ref: 23537

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Lysobacteraceae

genus: Lysobacter

species: Lysobacter sp.

full scientific name: Lysobacter sp.

strain designation: Root76

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23537
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 23537
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23537
  • sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
  • host species: Arabidopsis thaliana
  • geographic location: Cologne (50.958N 6.856E)
  • country: Germany
  • origin.country: DEU
  • continent: Europe
  • latitude: 50.958
  • longitude: 6.856

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lysobacter sp. Root76GCA_001428685scaffoldncbi1736598
66792Lysobacter sp. Root761736598.3wgspatric1736598
66792Lysobacter sp. Root762643221612draftimg1736598

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.688no
gram-positiveno98.338no
anaerobicno99.344no
aerobicyes92.4no
halophileno96.252no
spore-formingno95.75no
thermophileno99.154yes
glucose-utilyes89.855no
motileno87.507no
glucose-fermentno92.383no

External links

@ref: 23537

culture collection no.: DSM 102441

straininfo link

  • @ref: 90133
  • straininfo: 407832

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23537Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102441Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102441)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90133Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407832.1