Strain identifier

BacDive ID: 131739

Type strain: No

Species: Leifsonia sp.

Strain Designation: Leaf336

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf336 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 1870902 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23535

BacDive-ID: 131739

DSM-Number: 102618

keywords: genome sequence, Bacteria, mesophilic

description: Leifsonia sp. Leaf336 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

  • NCBI tax id: 1870902
  • Matching level: species

strain history

  • @ref: 23535
  • history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf336 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131739.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Leifsonia
  • species: Leifsonia sp.
  • full scientific name: Leifsonia Evtushenko et al. 2000
  • synonyms

    • @ref: 20215
    • synonym: Leifsonia

@ref: 23535

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Leifsonia

species: Leifsonia sp.

full scientific name: Leifsonia sp.

strain designation: Leaf336

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23535
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 23535
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23535
  • sample type: leaf of Arabidopsis thaliana, wild-type genotype
  • host species: Arabidopsis thaliana
  • geographic location: Tuebingen Farm (48.5560194N 9.134944444E)
  • country: Germany
  • origin.country: DEU
  • continent: Europe
  • latitude: 48.556
  • longitude: 9.1349

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Leifsonia sp. Leaf336GCA_001423695contigncbi1736341
66792Leifsonia sp. Leaf3361736341.3wgspatric1736341
66792Leifsonia sp. Leaf3362643221910draftimg1736341

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes51.037no
gram-positiveyes88.11no
anaerobicno99.563no
aerobicyes93.43no
halophileno92.61no
spore-formingno89.45no
thermophileno99.348yes
glucose-utilyes87.642no
flagellatedno94.649no
glucose-fermentno88.259no

External links

@ref: 23535

culture collection no.: DSM 102618

straininfo link

  • @ref: 90130
  • straininfo: 399362

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23535Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102618Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102618)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90130Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399362.1