Strain identifier
BacDive ID: 131730
Type strain:
Species: Klebsiella pneumoniae
Strain Designation: 102027, T2-1-2
Strain history: <- X. Y. Chan, Microbiome Laboratory, University of Malaya; T2-1-2 <- C. S. Yang, University of Malaya, Malaysia; T2-1-2
NCBI tax ID(s): 573 (species)
General
@ref: 23526
BacDive-ID: 131730
DSM-Number: 102040
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Klebsiella pneumoniae 102027 is a mesophilic bacterium that was isolated from tongue surface of healthy individual.
NCBI tax id
- NCBI tax id: 573
- Matching level: species
strain history
- @ref: 23526
- history: <- X. Y. Chan, Microbiome Laboratory, University of Malaya; T2-1-2 <- C. S. Yang, University of Malaya, Malaysia; T2-1-2
doi: 10.13145/bacdive131730.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Klebsiella
- species: Klebsiella pneumoniae
- full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Hyalococcus pneumoniae
@ref: 23526
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Klebsiella
species: Klebsiella pneumoniae
full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887
strain designation: 102027, T2-1-2
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
23526 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
23526 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
culture temp
- @ref: 23526
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
compound production
@ref | compound |
---|---|
23526 | N acyl homoserine lactones |
23526 | N-3 dodecanoyl-L-homoserine lactone |
23526 | N octanoylhomoserine lactone |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | + | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 17268 | myo-inositol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | + | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
23526 | + | - | + | - | + | - | + | - | - | + | - | + | + | + | + | + | + | + | + | + | - |
23526 | + | - | + | - | + | - | - | - | - | + | - | + | + | + | + | + | + | + | + | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 23526
- sample type: tongue surface of healthy individual
- country: Malaysia
- origin.country: MYS
- continent: Asia
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Oral cavity and airways
- Cat3: #Mouth
taxonmaps
- @ref: 69479
- File name: preview.99_10.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_9;99_10&stattab=map
- Last taxonomy: Klebsiella pneumoniae
- 16S sequence: HQ907956
- Sequence Identity:
- Total samples: 47492
- soil counts: 1141
- aquatic counts: 3887
- animal counts: 41102
- plant counts: 1362
Safety information
risk assessment
- @ref: 23526
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23526
- description: Klebsiella pneumoniae strain T2-1-2 16S ribosomal RNA gene, partial sequence
- accession: HQ907956
- length: 1532
- database: ena
- NCBI tax ID: 573
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Klebsiella pneumoniae T2-1-2 | GCA_000710805 | contig | ncbi | 1449985 |
66792 | Klebsiella pneumoniae T2-1-2 | 1449985.3 | wgs | patric | 1449985 |
66792 | Klebsiella pneumoniae T2-1-2 | 2609460025 | draft | img | 1449985 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 84.103 | no |
gram-positive | no | 97.137 | no |
anaerobic | no | 96.007 | no |
halophile | no | 89.445 | no |
spore-forming | no | 93.381 | no |
glucose-util | yes | 94.754 | no |
thermophile | no | 99.597 | no |
aerobic | yes | 86.9 | no |
flagellated | no | 93.471 | no |
glucose-ferment | yes | 90.476 | yes |
External links
@ref: 23526
culture collection no.: DSM 102040
straininfo link
- @ref: 90121
- straininfo: 396741
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
23526 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102040 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102040) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68368 | Automatically annotated from API 20E | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
90121 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396741.1 |