Strain identifier

BacDive ID: 131729

Type strain: No

Species: Klebsiella pneumoniae

Strain Designation: T2-1-1

Strain history: <- X. Y. Chan, Microbiome Laboratory, University of Malaya, Malaysia; T2-1-1 <- C. S. Yang, University of Malaya; T2-1-1

NCBI tax ID(s): 573 (species)

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General

@ref: 23525

BacDive-ID: 131729

DSM-Number: 102039

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Klebsiella pneumoniae T2-1-1 is a mesophilic bacterium that was isolated from tongue surface of healthy person.

NCBI tax id

  • NCBI tax id: 573
  • Matching level: species

strain history

  • @ref: 23525
  • history: <- X. Y. Chan, Microbiome Laboratory, University of Malaya, Malaysia; T2-1-1 <- C. S. Yang, University of Malaya; T2-1-1

doi: 10.13145/bacdive131729.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Klebsiella
  • species: Klebsiella pneumoniae
  • full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Hyalococcus pneumoniae

@ref: 23525

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Klebsiella

species: Klebsiella pneumoniae

full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887

strain designation: T2-1-1

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
23525COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23525TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 23525
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

compound production

@refcompound
23525N acyl homoserine lactones
23525N octanoylhomoserine lactone
23525N-3 dodecanoyl-L-homoserine lactone

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
23525+-+-+-+--+-+++++++++-
23525+-+-+----+-++++++++++

Isolation, sampling and environmental information

isolation

  • @ref: 23525
  • sample type: tongue surface of healthy person
  • country: Malaysia
  • origin.country: MYS
  • continent: Asia

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Oral cavity and airways
  • Cat3: #Mouth

taxonmaps

  • @ref: 69479
  • File name: preview.99_10.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_9;99_10&stattab=map
  • Last taxonomy: Klebsiella pneumoniae
  • 16S sequence: HQ907955
  • Sequence Identity:
  • Total samples: 47492
  • soil counts: 1141
  • aquatic counts: 3887
  • animal counts: 41102
  • plant counts: 1362

Safety information

risk assessment

  • @ref: 23525
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 23525
  • description: Klebsiella pneumoniae strain T2-1-1 16S ribosomal RNA gene, partial sequence
  • accession: HQ907955
  • length: 1532
  • database: ena
  • NCBI tax ID: 573

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Klebsiella pneumoniae T2-1-1GCA_000710855contigncbi1449984
66792Klebsiella pneumoniae T2-1-11449984.3wgspatric1449984
66792Klebsiella pneumoniae T2-1-12609460255draftimg1449984

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno84.222no
gram-positiveno97.143no
anaerobicno96.032no
halophileno89.633no
spore-formingno93.224no
thermophileno99.597yes
glucose-utilyes94.635no
aerobicyes86.666no
flagellatedno93.322no
glucose-fermentyes90.562no

External links

@ref: 23525

culture collection no.: DSM 102039

straininfo link

  • @ref: 90120
  • straininfo: 397943

literature

  • Pubmed-ID: 26981378
  • title: Whole genome analysis of Klebsiella pneumoniae T2-1-1 from human oral cavity.
  • authors: Chan KG, Yin WF, Chan XY
  • journal: Genom Data
  • DOI: 10.1016/j.gdata.2015.12.008
  • year: 2015

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23525Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102039Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102039)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90120Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397943.1