Strain identifier

BacDive ID: 131728

Type strain: No

Species: Hafnia alvei

Strain Designation: FB1

Strain history: <- J.-Y. Tan, Microbiome Group, University of Malaya, Malaysia; FB1

NCBI tax ID(s): 569 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23524

BacDive-ID: 131728

DSM-Number: 102038

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Hafnia alvei FB1 is a mesophilic human pathogen that was isolated from packed fish balls.

NCBI tax id

  • NCBI tax id: 569
  • Matching level: species

strain history

  • @ref: 23524
  • history: <- J.-Y. Tan, Microbiome Group, University of Malaya, Malaysia; FB1

doi: 10.13145/bacdive131728.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Hafniaceae
  • genus: Hafnia
  • species: Hafnia alvei
  • full scientific name: Hafnia alvei Møller 1954 (Approved Lists 1980)

@ref: 23524

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Hafniaceae

genus: Hafnia

species: Hafnia alvei

full scientific name: Hafnia alvei Møller 1954

strain designation: FB1

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23524
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 23524
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

compound production

@refcompound
23524N acyl homoserine lactones
23524N-(3 oxohexanoyl)homoserine lactone
23524

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
23524--+++----+-++--+---+-
23524+-+++----+-++--+---+-

Isolation, sampling and environmental information

isolation

  • @ref: 23524
  • sample type: packed fish balls
  • geographic location: Kuala Lumpur
  • country: Malaysia
  • origin.country: MYS
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Bottled, canned, packed food
#Engineered#Food production#Food
#Host#Fishes

Safety information

risk assessment

  • @ref: 23524
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Hafnia alvei FB1GCA_000597785completencbi1453496
66792Hafnia alvei FB11453496.3wgspatric1453496
66792Hafnia alvei FB11453496.5completepatric1453496
66792Hafnia alvei FB12667527506completeimg1453496

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.551no
motileyes89.551no
flagellatedno50no
flagellatedno50no
gram-positiveno98.043no
gram-positiveno98.043no
anaerobicno95.318no
anaerobicno95.318no
halophileno92.02no
halophileno92.02no
spore-formingno95.018no
spore-formingno95.018no
glucose-utilyes94.672no
glucose-utilyes94.672no
aerobicyes85.197no
aerobicyes85.197no
thermophileno99.034yes
thermophileno99.034yes
glucose-fermentyes93.762yes
glucose-fermentyes93.762yes

External links

@ref: 23524

culture collection no.: DSM 102038

straininfo link

  • @ref: 90119
  • straininfo: 402774

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23524Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102038Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102038)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
90119Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402774.1