Strain identifier
BacDive ID: 131726
Type strain: 
Species: Hydrogenophaga sp.
Strain Designation: Root209
Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root209 <- Y. Bai
NCBI tax ID(s): 1904254 (species)
General
@ref: 23522
BacDive-ID: 131726
DSM-Number: 102429
keywords: genome sequence, Bacteria, mesophilic
description: Hydrogenophaga sp. Root209 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Landsberg erecta .
NCBI tax id
- NCBI tax id: 1904254
- Matching level: species
strain history
- @ref: 23522
- history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root209 <- Y. Bai
doi: 10.13145/bacdive131726.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Hydrogenophaga
- species: Hydrogenophaga sp.
- full scientific name: Hydrogenophaga Willems et al. 1989
@ref: 23522
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Hydrogenophaga
species: Hydrogenophaga sp.
full scientific name: Hydrogenophaga sp.
strain designation: Root209
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 23522 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 23522 | FLOUR MEDIUM (DSMZ Medium 1613) | yes | https://mediadive.dsmz.de/medium/1613 | Name: FLOUR MEDIUM (DSMZ Medium 1613) Composition: Agar 16.0 g/l Plain flour 4.0 g/l CaCO3 0.4 g/l Distilled water |
culture temp
- @ref: 23522
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23522
- sample type: roots of Arabidopsis thaliana ecotype Landsberg erecta (Ler)
- host species: Arabidopsis thaliana ecotype Landsberg erecta
- geographic location: Potsdam, Golm district (52.416N 12.968E)
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 52.416
- longitude: 12.968
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Hydrogenophaga sp. Root209 | GCA_001428625 | scaffold | ncbi | 1736490 |
| 66792 | Hydrogenophaga sp. Root209 | 1736490.3 | wgs | patric | 1736490 |
| 66792 | Hydrogenophaga sp. Root209 | 2713896892 | draft | img | 1736490 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 71.968 | no |
| gram-positive | no | 98.443 | no |
| anaerobic | no | 97.81 | no |
| aerobic | yes | 91.206 | no |
| halophile | no | 94.57 | no |
| spore-forming | no | 95.086 | no |
| glucose-util | no | 50.852 | no |
| motile | yes | 87.206 | no |
| thermophile | no | 99.238 | no |
| glucose-ferment | no | 91.088 | no |
External links
@ref: 23522
culture collection no.: DSM 102429
straininfo link
- @ref: 90117
- straininfo: 397870
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23522 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102429 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102429) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90117 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397870.1 |