Strain identifier

BacDive ID: 131713

Type strain: No

Species: Escherichia coli

Strain Designation: CFT073

Strain history: <- U. Dobrindt, Univ. Münster, Germany; CFT073 <- H. L. T. Mobley, University of Michigan Medical School, Ann Arbor <- H. L. T. Mobley, University of Maryland Hospital, Baltimore

NCBI tax ID(s): 562 (species)

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General

@ref: 23509

BacDive-ID: 131713

DSM-Number: 103538

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Escherichia coli CFT073 is a mesophilic human pathogen that was isolated from Human clinical specimen - blood and urine from a woman with acute pyelonephritis.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 23509
  • history: <- U. Dobrindt, Univ. Münster, Germany; CFT073 <- H. L. T. Mobley, University of Michigan Medical School, Ann Arbor <- H. L. T. Mobley, University of Maryland Hospital, Baltimore

doi: 10.13145/bacdive131713.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 23509

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

strain designation: CFT073

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
23509TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
23509LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water

culture temp

  • @ref: 23509
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836818257ornithine+degradation
6836825094lysine+degradation

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

  • @ref: 68368
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68368gelatinase-
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
23509+-++----+--++-++-+-+
23509--++----+--++-++-+-+
23509-+++----++-++-++-+-+++-
23509+-++----++/--++-++-+-+-+-
23509+-+++/----++/--++-++-+-+++-
23509++++---+++/--++-++-+++---

Isolation, sampling and environmental information

isolation

  • @ref: 23509
  • sample type: Human clinical specimen - blood and urine from a woman with acute pyelonephritis
  • geographic location: Baltimore, Univ. of Maryland Hospital
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Host#Human#Female
#Host Body Product#Fluids#Urine
#Infection#Inflammation

Safety information

risk assessment

  • @ref: 23509
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Escherichia coli CFT073GCA_014262945completencbi199310
66792Escherichia coli CFT073GCA_000007445completencbi199310
66792Escherichia coli CFT073GCA_003028795chromosomencbi562
66792Escherichia coli CFT073199310.237completepatric199310
66792Escherichia coli CFT073199310.4completepatric199310
66792Escherichia coli CFT073GCA_021559855completencbi562

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno59.472no
gram-positiveno98.126no
anaerobicno95.6no
aerobicyes85.88no
halophileno90.513no
spore-formingno94.535no
glucose-utilyes94.733no
thermophileno99.49yes
motileyes89.916no
glucose-fermentyes94.058no

External links

@ref: 23509

culture collection no.: DSM 103538, ATCC 700928

straininfo link

  • @ref: 90104
  • straininfo: 44213

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23509Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103538Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103538)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
90104Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID44213.1