Strain identifier
BacDive ID: 131705
Type strain: 
Species: Duganella sp.
Strain Designation: Root198D2
Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root198D2 <- Y. Bai
NCBI tax ID(s): 1904440 (species)
General
@ref: 23501
BacDive-ID: 131705
DSM-Number: 102406
keywords: genome sequence, Bacteria, mesophilic
description: Duganella sp. Root198D2 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .
NCBI tax id
- NCBI tax id: 1904440
- Matching level: species
strain history
- @ref: 23501
- history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root198D2 <- Y. Bai
doi: 10.13145/bacdive131705.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Oxalobacteraceae
- genus: Duganella
- species: Duganella sp.
- full scientific name: Duganella Hiraishi et al. 1997
synonyms
- @ref: 20215
- synonym: Pseudoduganella
@ref: 23501
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Oxalobacteraceae
genus: Duganella
species: Duganella sp.
full scientific name: Duganella sp.
strain designation: Root198D2
type strain: no
Culture and growth conditions
culture medium
- @ref: 23501
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 23501
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23501
- sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
- host species: Arabidopsis thaliana
- geographic location: Cologne (50.958N 6.856E)
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 50.958
- longitude: 6.856
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Duganella sp. Root198D2 | GCA_001428585 | scaffold | ncbi | 1736489 |
| 66792 | Duganella sp. Root198D2 | 1736489.3 | wgs | patric | 1736489 |
| 66792 | Duganella sp. Root198D2 | 2671181067 | draft | img | 1736489 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 75.431 | no |
| gram-positive | no | 98.271 | no |
| anaerobic | no | 98.5 | no |
| aerobic | yes | 91.78 | no |
| halophile | no | 95.655 | no |
| spore-forming | no | 90.054 | no |
| thermophile | no | 98.984 | no |
| glucose-util | yes | 89.422 | no |
| motile | yes | 87.073 | no |
| glucose-ferment | no | 89.293 | no |
External links
@ref: 23501
culture collection no.: DSM 102406
straininfo link
- @ref: 90098
- straininfo: 407709
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23501 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102406 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102406) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90098 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407709.1 |