Strain identifier
BacDive ID: 131688
Type strain: 
Species: Clostridium sp.
Strain Designation: K311
Strain history: <- Y. Takahashi, Graduate School Environmental Studies, Tohoku Univ., Sendai, Japan; K311 <- Y. Takahashi {2006}
NCBI tax ID(s): 1506 (species)
version 9.2 (current version)
General
@ref: 23484
BacDive-ID: 131688
DSM-Number: 19740
keywords: 16S sequence, Bacteria, mesophilic
description: Clostridium sp. K311 is a mesophilic bacterium that was isolated from sludge.
NCBI tax id
- NCBI tax id: 1506
- Matching level: species
strain history
- @ref: 23484
- history: <- Y. Takahashi, Graduate School Environmental Studies, Tohoku Univ., Sendai, Japan; K311 <- Y. Takahashi {2006}
doi: 10.13145/bacdive131688.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium sp.
- full scientific name: Clostridium Prazmowski 1880 (Approved Lists 1980)
synonyms
@ref synonym 20215 Anaerobacter 20215 Inflabilis 20215 Tyzzerella 20215 Pseudoclostridium 20215 Lachnoclostridium
@ref: 23484
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Anaeroplasmatales
family: Clostridiaceae
genus: Clostridium
species: Clostridium sp.
full scientific name: Clostridium sp.
strain designation: K311
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 23484 | WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) | yes | https://mediadive.dsmz.de/medium/339 | Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water |
| 23484 | ANAEROCOLUMNA MEDIUM (DSMZ Medium 860) | yes | https://mediadive.dsmz.de/medium/860 | Name: ANAEROCOLUMNA MEDIUM (DSMZ Medium 860; with strain-specific modifications) Composition: Na2S2O3 x 5 H2O 2.49501 g/l Na2CO3 1.49701 g/l Yeast extract 0.998004 g/l NH4Cl 0.998004 g/l NaCl 0.598802 g/l L-Cysteine HCl x H2O 0.499002 g/l K2HPO4 0.299401 g/l KH2PO4 0.299401 g/l Na2S x 9 H2O 0.299401 g/l MgCl2 x 6 H2O 0.199601 g/l KCl 0.0998004 g/l CaCl2 x 2 H2O 0.0998004 g/l HCl 0.00374251 g/l FeCl2 x 4 H2O 0.00224551 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000284431 g/l MnCl2 x 4 H2O 0.000149701 g/l ZnCl2 0.00010479 g/l Na2MoO4 x 2 H2O 5.38922e-05 g/l NiCl2 x 6 H2O 3.59281e-05 g/l H3BO3 8.98204e-06 g/l CuCl2 x 2 H2O 2.99401e-06 g/l Distilled water |
culture temp
- @ref: 23484
- growth: positive
- type: growth
- temperature: 35
Isolation, sampling and environmental information
isolation
- @ref: 23484
- sample type: sludge
- geographic location: Gunma, Kunimura
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Mud (Sludge)
taxonmaps
- @ref: 69479
- File name: preview.99_1064.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_614;97_717;98_836;99_1064&stattab=map
- Last taxonomy: Clostridium
- 16S sequence: AB277213
- Sequence Identity:
- Total samples: 25309
- soil counts: 12801
- aquatic counts: 4474
- animal counts: 5452
- plant counts: 2582
Sequence information
16S sequences
- @ref: 23484
- description: Clostridium sp. K311 gene for 16S rRNA, partial sequence
- accession: AB277213
- length: 1345
- database: nuccore
- NCBI tax ID: 406802
GC content
- @ref: 23484
- GC-content: 30.0
External links
@ref: 23484
culture collection no.: DSM 19740
straininfo link
- @ref: 90083
- straininfo: 401009
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23484 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19740 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19740) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 90083 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401009.1 |