Strain identifier
BacDive ID: 131659
Type strain:
Species: Brevibacillus sp.
Strain Designation: Leaf182
Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf182 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
NCBI tax ID(s): 1882945 (species)
General
@ref: 23455
BacDive-ID: 131659
DSM-Number: 102581
keywords: genome sequence, Bacteria, mesophilic
description: Brevibacillus sp. Leaf182 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.
NCBI tax id
- NCBI tax id: 1882945
- Matching level: species
strain history
- @ref: 23455
- history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf182 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
doi: 10.13145/bacdive131659.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Brevibacillus
- species: Brevibacillus sp.
- full scientific name: Brevibacillus Shida et al. 1996
@ref: 23455
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Brevibacillus
species: Brevibacillus sp.
full scientific name: Brevibacillus sp.
strain designation: Leaf182
type strain: no
Culture and growth conditions
culture medium
- @ref: 23455
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 23455
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23455
- sample type: leaf of Arabidopsis thaliana, wild-type genotype
- host species: Arabidopsis thaliana
- geographic location: Brugg (47.4816806N 8.217547222E)
- country: Switzerland
- origin.country: CHE
- continent: Europe
- latitude: 47.4817
- longitude: 8.2176
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Brevibacillus sp. Leaf182 | GCA_001423865 | scaffold | ncbi | 1736290 |
66792 | Brevibacillus sp. Leaf182 | 1736290.3 | wgs | patric | 1736290 |
66792 | Brevibacillus sp. Leaf182 | 2643221814 | draft | img | 1736290 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | yes | 62.893 | no |
flagellated | yes | 62.893 | no |
gram-positive | yes | 69.495 | no |
gram-positive | yes | 69.495 | no |
anaerobic | no | 98.284 | no |
anaerobic | no | 98.284 | no |
aerobic | yes | 84.816 | no |
aerobic | yes | 84.816 | no |
halophile | no | 93.12 | no |
halophile | no | 93.12 | no |
spore-forming | yes | 95.451 | no |
spore-forming | yes | 95.451 | no |
thermophile | no | 98.232 | yes |
thermophile | no | 98.232 | yes |
glucose-util | yes | 86.708 | no |
glucose-util | yes | 86.708 | no |
motile | yes | 86.4 | no |
motile | yes | 86.4 | no |
glucose-ferment | no | 94.161 | no |
glucose-ferment | no | 94.161 | no |
External links
@ref: 23455
culture collection no.: DSM 102581
straininfo link
- @ref: 90056
- straininfo: 403145
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 30038309 | Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome. | Helfrich EJN, Vogel CM, Ueoka R, Schafer M, Ryffel F, Muller DB, Probst S, Kreuzer M, Piel J, Vorholt JA | Nat Microbiol | 10.1038/s41564-018-0200-0 | 2018 | Anti-Bacterial Agents/isolation & purification, Arabidopsis/*microbiology, Bacteria/*classification/genetics/isolation & purification/metabolism, Bacterial Proteins/genetics, Biological Products/*metabolism, *Biosynthetic Pathways, Data Mining, High-Throughput Nucleotide Sequencing/methods, Multigene Family, Phylogeny, Plant Leaves/microbiology, Sequence Analysis, DNA/methods | Enzymology |
34695706 | Polyketide-derived macrobrevins from marine macroalga-associated Bacillus amyloliquefaciens as promising antibacterial agents against pathogens causing nosocomial infections. | Chakraborty K, Kizhakkekalam VK, Joy M | Phytochemistry | 10.1016/j.phytochem.2021.112983 | 2021 | Anti-Bacterial Agents/pharmacology, *Bacillus amyloliquefaciens, *Cross Infection, *Methicillin-Resistant Staphylococcus aureus, Microbial Sensitivity Tests, *Polyketides/pharmacology, Prospective Studies, *Seaweed, Staphylococcus aureus |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
23455 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102581 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102581) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
90056 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403145.1 |