Strain identifier

BacDive ID: 131659

Type strain: No

Species: Brevibacillus sp.

Strain Designation: Leaf182

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf182 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 1882945 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9 (current version):
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9 (current version)

General

@ref: 23455

BacDive-ID: 131659

DSM-Number: 102581

keywords: genome sequence, Bacteria, spore-forming

description: Brevibacillus sp. Leaf182 is a spore-forming bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

  • NCBI tax id: 1882945
  • Matching level: species

strain history

  • @ref: 23455
  • history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf182 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131659.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Brevibacillus
  • species: Brevibacillus sp.
  • full scientific name: Brevibacillus Shida et al. 1996

@ref: 23455

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Brevibacillus

species: Brevibacillus sp.

full scientific name: Brevibacillus sp.

strain designation: Leaf182

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23455
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 23455
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

spore formation

@refspore formationconfidence
69480yes95.451
69480yes95.451

Isolation, sampling and environmental information

isolation

  • @ref: 23455
  • sample type: leaf of Arabidopsis thaliana, wild-type genotype
  • host species: Arabidopsis thaliana
  • geographic location: Brugg (47.4816806N 8.217547222E)
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe
  • latitude: 47.4817
  • longitude: 8.2176

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Brevibacillus sp. Leaf182GCA_001423865scaffoldncbi1736290
66792Brevibacillus sp. Leaf1821736290.3wgspatric1736290
66792Brevibacillus sp. Leaf1822643221814draftimg1736290

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes62.893no
flagellatedyes62.893no
gram-positiveyes69.495no
gram-positiveyes69.495no
anaerobicno98.284no
anaerobicno98.284no
aerobicyes84.816no
aerobicyes84.816no
halophileno93.12no
halophileno93.12no
spore-formingyes95.451no
spore-formingyes95.451no
thermophileno98.232yes
thermophileno98.232yes
glucose-utilyes86.708no
glucose-utilyes86.708no
motileyes86.4no
motileyes86.4no
glucose-fermentno94.161no
glucose-fermentno94.161no

External links

@ref: 23455

culture collection no.: DSM 102581

straininfo link

  • @ref: 90056
  • straininfo: 403145

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny30038309Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome.Helfrich EJN, Vogel CM, Ueoka R, Schafer M, Ryffel F, Muller DB, Probst S, Kreuzer M, Piel J, Vorholt JANat Microbiol10.1038/s41564-018-0200-02018Anti-Bacterial Agents/isolation & purification, Arabidopsis/*microbiology, Bacteria/*classification/genetics/isolation & purification/metabolism, Bacterial Proteins/genetics, Biological Products/*metabolism, *Biosynthetic Pathways, Data Mining, High-Throughput Nucleotide Sequencing/methods, Multigene Family, Phylogeny, Plant Leaves/microbiology, Sequence Analysis, DNA/methodsEnzymology
34695706Polyketide-derived macrobrevins from marine macroalga-associated Bacillus amyloliquefaciens as promising antibacterial agents against pathogens causing nosocomial infections.Chakraborty K, Kizhakkekalam VK, Joy MPhytochemistry10.1016/j.phytochem.2021.1129832021Anti-Bacterial Agents/pharmacology, *Bacillus amyloliquefaciens, *Cross Infection, *Methicillin-Resistant Staphylococcus aureus, Microbial Sensitivity Tests, *Polyketides/pharmacology, Prospective Studies, *Seaweed, Staphylococcus aureus

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23455Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102581Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102581)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90056Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403145.1