Strain identifier
BacDive ID: 131642
Type strain: 
Species: Bacillus sp.
Strain Designation: Root131
Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root131 <- Y. Bai
NCBI tax ID(s): 1409 (species)
version 8.1 (current version)
General
@ref: 23438
BacDive-ID: 131642
DSM-Number: 102373
keywords: genome sequence, Bacteria, mesophilic
description: Bacillus sp. Root131 is a mesophilic bacterium that was isolated from Roots of Arabidopsis thaliana .
NCBI tax id
- NCBI tax id: 1409
- Matching level: species
strain history
- @ref: 23438
- history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root131 <- Y. Bai
doi: 10.13145/bacdive131642.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus sp.
- full scientific name: Bacillus Cohn 1872 (Approved Lists 1980)
synonyms
@ref synonym 20215 Quasibacillus 20215 Pseudobacillus 20215 Maribacillus
@ref: 23438
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus sp.
full scientific name: Bacillus sp.
strain designation: Root131
type strain: no
Culture and growth conditions
culture medium
- @ref: 23438
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 23438
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23438
- sample type: Roots of Arabidopsis thaliana (ecotype Shakdara)
- host species: Arabidopsis thaliana
- geographic location: Cologne (50.958N 6.856E)
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 50.958
- longitude: 6.856
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus sp. Root131 | GCA_001429475 | scaffold | ncbi | 1736451 |
| 66792 | Bacillus sp. Root131 | 1736451.3 | wgs | patric | 1736451 |
| 66792 | Bacillus sp. Root131 | 2643221730 | draft | img | 1736451 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 73.928 | no |
| gram-positive | yes | 87.488 | no |
| anaerobic | no | 98.435 | no |
| aerobic | yes | 78.649 | no |
| halophile | no | 93.841 | no |
| spore-forming | yes | 93.005 | no |
| glucose-util | yes | 89.374 | no |
| motile | yes | 63.584 | no |
| thermophile | no | 99.742 | yes |
| glucose-ferment | no | 90.84 | no |
External links
@ref: 23438
culture collection no.: DSM 102373
straininfo link
- @ref: 90047
- straininfo: 403595
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23438 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102373 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102373) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90047 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403595.1 |