Strain identifier
BacDive ID: 131641
Type strain:
Species: Bacillus sp.
Strain Designation: Root11
Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root11 <- Y. Bai
NCBI tax ID(s): 1409 (species)
version 8.1 (current version)
General
@ref: 23437
BacDive-ID: 131641
DSM-Number: 102372
keywords: genome sequence, Bacteria, mesophilic
description: Bacillus sp. Root11 is a mesophilic bacterium that was isolated from Roots of Arabidopsis thaliana .
NCBI tax id
- NCBI tax id: 1409
- Matching level: species
strain history
- @ref: 23437
- history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root11 <- Y. Bai
doi: 10.13145/bacdive131641.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus sp.
- full scientific name: Bacillus Cohn 1872 (Approved Lists 1980)
synonyms
@ref synonym 20215 Quasibacillus 20215 Pseudobacillus 20215 Maribacillus
@ref: 23437
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus sp.
full scientific name: Bacillus sp.
strain designation: Root11
type strain: no
Culture and growth conditions
culture medium
- @ref: 23437
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 23437
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23437
- sample type: Roots of Arabidopsis thaliana (ecotype Columbia)
- host species: Arabidopsis thaliana
- geographic location: Cologne (50.958N 6.856E)
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 50.958
- longitude: 6.856
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Root (Rhizome) |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bacillus sp. Root11 | GCA_001429465 | scaffold | ncbi | 1736425 |
66792 | Bacillus sp. Root11 | 1736425.3 | wgs | patric | 1736425 |
66792 | Bacillus sp. Root11 | 2643221729 | draft | img | 1736425 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | yes | 73.928 | no |
gram-positive | yes | 87.488 | no |
anaerobic | no | 98.435 | no |
aerobic | yes | 78.649 | no |
halophile | no | 93.841 | no |
spore-forming | yes | 93.005 | no |
glucose-util | yes | 89.374 | no |
motile | yes | 63.584 | no |
thermophile | no | 99.742 | yes |
glucose-ferment | no | 90.827 | no |
External links
@ref: 23437
culture collection no.: DSM 102372
straininfo link
- @ref: 90046
- straininfo: 402037
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
23437 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102372 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102372) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
90046 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402037.1 |