Archive BacDiveID:10.13145/bacdive131626.20230509.8.1

Strain identifier

BacDive ID: 131626

Type strain:

Species: Phocaeicola fibrisolvens

Strain Designation: Sanger 21, Sanger_21

Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_21

NCBI tax ID(s): 2773926 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23422

BacDive-ID: 131626

DSM-Number: 102146

keywords: genome sequence, Bacteria, mesophilic

description: Phocaeicola fibrisolvens Sanger 21 is a mesophilic bacterium that was isolated from faeces from healthy human.

NCBI tax id

NCBI tax id: 2773926
Matching level: species

strain history

@ref: 23422
history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_21

doi: 10.13145/bacdive131626.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacteroidota
domain: Bacteria
phylum: Bacteroidota
class: Bacteroidia
order: Bacteroidales
family: Bacteroidaceae
genus: Phocaeicola
species: Phocaeicola fibrisolvens
full scientific name: Phocaeicola fibrisolvens Hitch et al. 2022

@ref: 23422

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Bacteroidaceae

genus: Phocaeicola

species: Phocaeicola fibrisolvens

full scientific name: Phocaeicola fibrisolvens Hitch et al. 2022

strain designation: Sanger 21, Sanger_21

type strain: yes

Culture and growth conditions

culture medium

@ref: 23422
name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
growth: yes
link: https://mediadive.dsmz.de/medium/110
composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

culture temp

@ref: 23422
growth: positive
type: growth
temperature: 37
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23422
sample type: faeces from healthy human
geographic location: Cambridgeshire
country: United Kingdom
origin.country: GBR
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Host	#Human
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Sequence information

Genome sequences

@ref: 66792
description: Phocaeicola fibrisolvens Sanger_21
accession: GCA_025567125
assembly level: scaffold
database: ncbi
NCBI tax ID: 2981793

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	no	91.214	no
flagellated	no	96.645	no
gram-positive	no	97.57	no
anaerobic	yes	99.214	no
aerobic	no	97.392	no
halophile	no	83.467	no
spore-forming	no	95.769	no
glucose-ferment	yes	71.765	no
thermophile	no	98.751	yes
glucose-util	yes	88.934	no

External links

@ref: 23422

culture collection no.: DSM 102146, JCM 34813

straininfo link

@ref: 90032
straininfo: 407171

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23422	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102146	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102146)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90032	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID407171.1