Archive BacDiveID:10.13145/bacdive131608.20230509.8.1

Strain identifier

BacDive ID: 131608

Type strain:

Species: Arthrobacter sp.

Strain Designation: Leaf137

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf137 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 1667 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23404

BacDive-ID: 131608

DSM-Number: 102320

keywords: genome sequence, Bacteria, mesophilic

description: Arthrobacter sp. Leaf137 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

NCBI tax id: 1667
Matching level: species

strain history

@ref: 23404
history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf137 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131608.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter sp.
full scientific name: Arthrobacter Conn and Dimmick 1947 (Approved Lists 1980)

@ref: 23404

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter sp.

full scientific name: Arthrobacter sp.

strain designation: Leaf137

type strain: no

Culture and growth conditions

culture medium

@ref: 23404
name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
growth: yes
link: https://mediadive.dsmz.de/medium/92
composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@ref: 23404
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23404
sample type: leaf of Arabidopsis thaliana, wild-type genotype
host species: Arabidopsis thaliana
geographic location: Brugg (47.4816806N 8.217547222E)
country: Switzerland
origin.country: CHE
continent: Europe
latitude: 47.4817
longitude: 8.2176

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Arthrobacter sp. Leaf137	GCA_001423525	contig	ncbi	1736271
66792	Arthrobacter sp. Leaf137	1736271.3	wgs	patric	1736271
66792	Arthrobacter sp. Leaf137	2643221808	draft	img	1736271

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	no	89.36	no
gram-positive	yes	93.546	no
anaerobic	no	99.65	no
aerobic	yes	96.287	no
halophile	no	84.98	no
spore-forming	no	86.954	no
thermophile	no	99.014	yes
glucose-util	yes	86.003	no
flagellated	no	96.227	no
glucose-ferment	no	90.301	no

External links

@ref: 23404

culture collection no.: DSM 102320

straininfo link

@ref: 90014
straininfo: 405610

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23404	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102320	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102320)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90014	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID405610.1