Strain identifier
BacDive ID: 131577
Type strain: 
Species: Tsukamurella hongkongensis
Strain Designation: HKU53
Strain history: J. L. L. Teng; Dept. of Microbiol., Univ. of Hong Kong, China; HKU53.
NCBI tax ID(s): 1671023 (species)
version 8.1 (current version)
General
@ref: 22804
BacDive-ID: 131577
DSM-Number: 100209
keywords: 16S sequence, Bacteria, mesophilic, human pathogen
description: Tsukamurella hongkongensis HKU53 is a mesophilic human pathogen that was isolated from human clinical sample, blood culture of a patient with catheter-related bacteraemia.
NCBI tax id
- NCBI tax id: 1671023
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22804 | <- J. L. L. Teng, University of Hong Kong; HKU53 |
| 67770 | J. L. L. Teng; Dept. of Microbiol., Univ. of Hong Kong, China; HKU53. |
doi: 10.13145/bacdive131577.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Tsukamurellaceae
- genus: Tsukamurella
- species: Tsukamurella hongkongensis
- full scientific name: Tsukamurella hongkongensis Teng et al. 2016
@ref: 22804
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Tsukamurellaceae
genus: Tsukamurella
species: Tsukamurella hongkongensis
full scientific name: Tsukamurella hongkongensis Teng et al. 2016
strain designation: HKU53
type strain: no
Morphology
multimedia
- @ref: 22804
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_100209.jpg
- caption: Medium 535a 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 22804
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22804 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 22804 | human clinical sample, blood culture of a patient with catheter-related bacteraemia | Queen Mary Hospital | Hong Kong | HKG | Asia |
| 67770 | Blood culture of a patient with catheter-related bacteraemia | Hong Kong | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Disease | |
| #Infection | #Medical device | #Catheter |
| #Infection | #Patient | #Blood culture |
| #Host | #Human |
taxonmaps
- @ref: 69479
- File name: preview.99_3845.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1974;97_2373;98_2929;99_3845&stattab=map
- Last taxonomy: Tsukamurella
- 16S sequence: KP888573
- Sequence Identity:
- Total samples: 12359
- soil counts: 3431
- aquatic counts: 2978
- animal counts: 5160
- plant counts: 790
Safety information
risk assessment
- @ref: 22804
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22804
- description: Tsukamurella hongkongensis strain HKU53 16S ribosomal RNA gene, partial sequence
- accession: KP888573
- length: 1405
- database: ena
- NCBI tax ID: 1671023
GC content
| @ref | GC-content | method |
|---|---|---|
| 22804 | 71.2 | thermal denaturation, midpoint method (Tm) |
| 67770 | 68.9-73.5 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 22804
culture collection no.: DSM 100209, JCM 30716
straininfo link
- @ref: 89983
- straininfo: 405190
literature
- topic: Phylogeny
- Pubmed-ID: 26530900
- title: Tsukamurella hongkongensis sp. nov. and Tsukamurella sinensis sp. nov., isolated from patients with keratitis, catheter-related bacteraemia and conjunctivitis.
- authors: Teng JLL, Tang Y, Wong SSY, Ngan AHY, Huang Y, Tsang CC, Choi GKY, Lau SKP, Woo PCY
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000733
- year: 2015
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Adult, Bacteremia/*microbiology, Bacterial Typing Techniques, Base Composition, Catheters, Indwelling/microbiology, Conjunctiva/microbiology, Conjunctivitis/*microbiology, Cornea/microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Hong Kong, Humans, Keratitis/*microbiology, Male, Middle Aged, Molecular Sequence Data, Mycolic Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22804 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100209 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100209) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89983 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405190.1 |