Strain identifier
BacDive ID: 131562
Type strain: 
Species: Flavisolibacter ginsenosidimutans
Strain history: W.-T. Im Gsoil 636.
NCBI tax ID(s): 661481 (species)
version 9 (current version)
General
@ref: 22789
BacDive-ID: 131562
DSM-Number: 22793
keywords: genome sequence, 16S sequence, Bacteria
description: Flavisolibacter ginsenosidimutans DSM 22793 is a bacterium that was isolated from soil of a ginseng field.
NCBI tax id
- NCBI tax id: 661481
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22789 | <- S.-T. Lee, KAIST <- W.-T. Im; Gsoil 636 |
| 67770 | W.-T. Im Gsoil 636. |
doi: 10.13145/bacdive131562.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Chitinophagia
- order: Chitinophagales
- family: Chitinophagaceae
- genus: Flavisolibacter
- species: Flavisolibacter ginsenosidimutans
- full scientific name: Flavisolibacter ginsenosidimutans Zhao et al. 2015
@ref: 22789
domain: Bacteria
phylum: Bacteroidetes
class: Chitinophagia
order: Sphingobacteriales
family: Chitinophagaceae
genus: Flavisolibacter
species: Flavisolibacter ginsenosidimutans
full scientific name: Flavisolibacter ginsenosidimutans Zhao et al. 2015
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22789
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 22789 | positive | growth | 28 |
| 67770 | positive | growth | 30 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 22789 | soil of a ginseng field | Pocheon Province | Republic of Korea | KOR | Asia |
| 67770 | Soil of a ginseng cultivation field in Pocheon Province | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
Safety information
risk assessment
- @ref: 22789
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22789
- description: Flavisolibacter ginsenosidimutans strain Gsoil 636 16S ribosomal RNA gene, partial sequence
- accession: GQ339897
- length: 1430
- database: nuccore
- NCBI tax ID: 661481
Genome sequences
- @ref: 67770
- description: Flavisolibacter ginsenosidimutans Gsoil 636
- accession: GCA_007970805
- assembly level: complete
- database: ncbi
- NCBI tax ID: 661481
GC content
- @ref: 22789
- GC-content: 48.9
- method: high performance liquid chromatography (HPLC)
External links
@ref: 22789
culture collection no.: DSM 22793, JCM 18197, KACC 14277, KCTC 22818, Gsoil 636
straininfo link
- @ref: 89976
- straininfo: 400039
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26442990 | Flavisolibacter ginsenosidimutans sp. nov., with ginsenoside-converting activity isolated from soil used for cultivating ginseng. | Zhao Y, Liu Q, Kang MS, Jin F, Yu H, Im WT | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000660 | 2015 | Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ginsenosides/*metabolism, Molecular Sequence Data, Panax/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 29458484 | Flavisolibacter metallilatus sp. nov., isolated from an automotive air conditioning system and emended description of the genus Flavisolibacter. | Kim DU, Lee H, Lee S, Kim SG, Park AY, Ahn JH, Ka JO | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002609 | 2018 | *Air Conditioning, *Automobiles, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 29671178 | Flavisolibacter carri sp. nov., isolated from an automotive air-conditioning system. | Lee H, Kim DU, Lee S, Kim SG, Park AY, Ahn JH, Ka JO | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1086-9 | 2018 | *Air Conditioning, *Automobiles, Bacteroidetes/genetics/*isolation & purification/metabolism, Genotyping Techniques, Phenotype, Phosphatidylethanolamines/metabolism | Metabolism |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22789 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22793 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22793) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 89976 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400039.1 |