Strain identifier

BacDive ID: 131562

Type strain: Yes

Species: Flavisolibacter ginsenosidimutans

Strain history: W.-T. Im Gsoil 636.

NCBI tax ID(s): 661481 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22789

BacDive-ID: 131562

DSM-Number: 22793

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Flavisolibacter ginsenosidimutans DSM 22793 is a mesophilic bacterium that was isolated from soil of a ginseng field.

NCBI tax id

  • NCBI tax id: 661481
  • Matching level: species

strain history

@refhistory
22789<- S.-T. Lee, KAIST <- W.-T. Im; Gsoil 636
67770W.-T. Im Gsoil 636.

doi: 10.13145/bacdive131562.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Chitinophagia
  • order: Chitinophagales
  • family: Chitinophagaceae
  • genus: Flavisolibacter
  • species: Flavisolibacter ginsenosidimutans
  • full scientific name: Flavisolibacter ginsenosidimutans Zhao et al. 2015

@ref: 22789

domain: Bacteria

phylum: Bacteroidetes

class: Chitinophagia

order: Sphingobacteriales

family: Chitinophagaceae

genus: Flavisolibacter

species: Flavisolibacter ginsenosidimutans

full scientific name: Flavisolibacter ginsenosidimutans Zhao et al. 2015

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 22789
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22789positivegrowth28mesophilic
67770positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
22789soil of a ginseng fieldPocheon ProvinceRepublic of KoreaKORAsia
67770Soil of a ginseng cultivation field in Pocheon ProvinceRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 22789
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22789
  • description: Flavisolibacter ginsenosidimutans strain Gsoil 636 16S ribosomal RNA gene, partial sequence
  • accession: GQ339897
  • length: 1430
  • database: ena
  • NCBI tax ID: 661481

Genome sequences

  • @ref: 67770
  • description: Flavisolibacter ginsenosidimutans Gsoil 636
  • accession: GCA_007970805
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 661481

GC content

  • @ref: 22789
  • GC-content: 48.9
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 22789

culture collection no.: DSM 22793, JCM 18197, KACC 14277, KCTC 22818, Gsoil 636

straininfo link

  • @ref: 89976
  • straininfo: 400039

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26442990Flavisolibacter ginsenosidimutans sp. nov., with ginsenoside-converting activity isolated from soil used for cultivating ginseng.Zhao Y, Liu Q, Kang MS, Jin F, Yu H, Im WTInt J Syst Evol Microbiol10.1099/ijsem.0.0006602015Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ginsenosides/*metabolism, Molecular Sequence Data, Panax/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny29458484Flavisolibacter metallilatus sp. nov., isolated from an automotive air conditioning system and emended description of the genus Flavisolibacter.Kim DU, Lee H, Lee S, Kim SG, Park AY, Ahn JH, Ka JOInt J Syst Evol Microbiol10.1099/ijsem.0.0026092018*Air Conditioning, *Automobiles, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny29671178Flavisolibacter carri sp. nov., isolated from an automotive air-conditioning system.Lee H, Kim DU, Lee S, Kim SG, Park AY, Ahn JH, Ka JOAntonie Van Leeuwenhoek10.1007/s10482-018-1086-92018*Air Conditioning, *Automobiles, Bacteroidetes/genetics/*isolation & purification/metabolism, Genotyping Techniques, Phenotype, Phosphatidylethanolamines/metabolismMetabolism

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22789Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-22793Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22793)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
89976Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400039.1