Strain identifier
BacDive ID: 131556
Type strain: 
Species: Bradyrhizobium kavangense
Strain Designation: 14-3
Strain history: <- B. Reinhold-Hurek, Univ. Bremen, Germany; 14-3 <- J. L. Grönemeyer
NCBI tax ID(s): 1549892 (species)
version 8.1 (current version)
General
@ref: 22783
BacDive-ID: 131556
DSM-Number: 100299
keywords: 16S sequence, Bacteria, mesophilic
description: Bradyrhizobium kavangense 14-3 is a mesophilic bacterium that was isolated from nodule of Vigna unguiculata .
NCBI tax id
- NCBI tax id: 1549892
- Matching level: species
strain history
- @ref: 22783
- history: <- B. Reinhold-Hurek, Univ. Bremen, Germany; 14-3 <- J. L. Grönemeyer
doi: 10.13145/bacdive131556.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Nitrobacteraceae
- genus: Bradyrhizobium
- species: Bradyrhizobium kavangense
- full scientific name: Bradyrhizobium kavangense Grönemeyer et al. 2015
@ref: 22783
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Nitrobacteraceae
genus: Bradyrhizobium
species: Bradyrhizobium kavangense
full scientific name: Bradyrhizobium kavangense Grönemeyer et al. 2015
strain designation: 14-3
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22783
- name: RHIZOBIUM MEDIUM (DSMZ Medium 98)
- growth: yes
- link: https://mediadive.dsmz.de/medium/98
- composition: Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
culture temp
- @ref: 22783
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22783
- sample type: nodule of Vigna unguiculata (cowpea)
- host species: Vigna unguiculata
- geographic location: Kavango region, near Mashare
- country: Namibia
- origin.country: NAM
- continent: Africa
- latitude: 17.8955
- longitude: 20.3315
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root nodule |
taxonmaps
- @ref: 69479
- File name: preview.99_871.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_297;97_329;98_370;99_871&stattab=map
- Last taxonomy: Bradyrhizobium
- 16S sequence: KP899562
- Sequence Identity:
- Total samples: 5154
- soil counts: 1424
- aquatic counts: 688
- animal counts: 2839
- plant counts: 203
Safety information
risk assessment
- @ref: 22783
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22783
- description: Bradyrhizobium kavangense strain 14-3 16S ribosomal RNA gene, partial sequence
- accession: KP899562
- length: 1339
- database: ena
- NCBI tax ID: 1549892
External links
@ref: 22783
culture collection no.: DSM 100299, LMG 28790, NTCCM 0012
straininfo link
- @ref: 89970
- straininfo: 396446
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26446190 | Bradyrhizobium kavangense sp. nov., a symbiotic nitrogen-fixing bacterium from root nodules of traditional Namibian pulses. | Lasse Gronemeyer J, Hurek T, Reinhold-Hurek B | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000666 | 2015 | Bacterial Typing Techniques, Bradyrhizobium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fabaceae/*microbiology, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Namibia, *Nitrogen Fixation, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Symbiosis/genetics | Genetics |
| Phylogeny | 30952658 | Insights into the Phylogeny, Nodule Function, and Biogeographic Distribution of Microsymbionts Nodulating the Orphan Kersting's Groundnut [Macrotyloma geocarpum (Harms) Marechal & Baudet] in African Soils. | Mohammed M, Jaiswal SK, Dakora FD | Appl Environ Microbiol | 10.1128/AEM.00342-19 | 2019 | Bacterial Proteins/genetics, Bradyrhizobium/classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fabaceae/*microbiology, Genes, Bacterial/genetics, Genetic Variation, Ghana, Mozambique, Multilocus Sequence Typing, N-Acetylglucosaminyltransferases/genetics, Nitrogen Fixation, Oxidoreductases/genetics, Photosynthesis, *Phylogeny, Plant Root Nodulation, RNA, Ribosomal, 16S/genetics, Rhizobium/*classification/genetics/*isolation & purification/metabolism, Root Nodules, Plant/*microbiology/physiology, Sequence Analysis, DNA, Soil/chemistry, *Soil Microbiology, South Africa, *Symbiosis | Enzymology |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22783 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100299 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100299) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89970 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396446.1 |