Strain identifier
BacDive ID: 131553
Type strain: 
Species: Clostridium luticellarii
Strain Designation: FW431
Strain history: <- Q. Wang, Shandong Univ., Jinan, China; FW431 <- Q. Wang {2014}
NCBI tax ID(s): 1691940 (species)
version 8.1 (current version)
General
@ref: 22780
BacDive-ID: 131553
DSM-Number: 29923
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive
description: Clostridium luticellarii FW431 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from mud from the bottom of a mud cellar for producing strong aromatic Chinese liquors.
NCBI tax id
- NCBI tax id: 1691940
- Matching level: species
strain history
- @ref: 22780
- history: <- Q. Wang, Shandong Univ., Jinan, China; FW431 <- Q. Wang {2014}
doi: 10.13145/bacdive131553.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium luticellarii
- full scientific name: Clostridium luticellarii Wang et al. 2015
@ref: 22780
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium luticellarii
full scientific name: Clostridium luticellarii Wang et al. 2015
strain designation: FW431
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 99.719
Culture and growth conditions
culture medium
- @ref: 22780
- name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104c
- composition: Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 22780
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 22780 | anaerobe | |
| 69480 | anaerobe | 100 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 98 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 22780
- sample type: mud from the bottom of a mud cellar for producing strong aromatic Chinese liquors
- geographic location: Sichuan Province
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Mud (Sludge)
taxonmaps
- @ref: 69479
- File name: preview.99_39583.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_42;96_8269;97_22959;98_28947;99_39583&stattab=map
- Last taxonomy: Clostridium luticellarii subclade
- 16S sequence: KP342256
- Sequence Identity:
- Total samples: 1171
- soil counts: 528
- aquatic counts: 244
- animal counts: 269
- plant counts: 130
Safety information
risk assessment
- @ref: 22780
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22780
- description: Clostridium luticellarii strain FW431 16S ribosomal RNA gene, partial sequence
- accession: KP342256
- length: 1471
- database: ena
- NCBI tax ID: 1691940
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium luticellarii DSM 29923 | GCA_002995845 | contig | ncbi | 1691940 |
| 66792 | Clostridium luticellarii strain DSM 29923 | 1691940.4 | wgs | patric | 1691940 |
| 66792 | Clostridium luticellarii DSM 29923 | 2791355328 | draft | img | 1691940 |
GC content
- @ref: 22780
- GC-content: 44.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 98 | no |
| motile | yes | 86.675 | no |
| gram-positive | yes | 68.74 | no |
| anaerobic | yes | 97.974 | yes |
| aerobic | no | 97.261 | no |
| halophile | no | 95.033 | no |
| spore-forming | yes | 96.614 | no |
| glucose-util | yes | 85.969 | no |
| flagellated | no | 52.927 | no |
| thermophile | no | 96.914 | no |
| glucose-ferment | yes | 59.032 | no |
External links
@ref: 22780
culture collection no.: DSM 29923, CGMCC 1.5201, KCTC 15519
straininfo link
- @ref: 89967
- straininfo: 399806
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26420591 | Clostridium luticellarii sp. nov., isolated from a mud cellar used for producing strong aromatic liquors. | Wang Q, Wang CD, Li CH, Li JG, Chen Q, Li YZ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000641 | 2015 | *Alcoholic Beverages, Bacterial Typing Techniques, Base Composition, China, Clostridium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
| Genetics | 29724845 | Draft Genome Sequence of the Butanoic Acid-Producing Bacterium Clostridium luticellarii DSM 29923, Used for Strong Aromatic Chinese Liquor Production. | Poehlein A, Bremekamp R, Lutz VT, Schulz LM, Daniel R | Genome Announc | 10.1128/genomeA.00377-18 | 2018 | Biotechnology |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22780 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29923 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29923) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 89967 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399806.1 |