Strain identifier
BacDive ID: 131531
Type strain:
Species: Adlercreutzia muris
Strain Designation: WCA-131-CoC-2
Strain history: <- Barbel Fosel, DSM <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany, WCA-131-CoC-2
NCBI tax ID(s): 1796610 (species)
General
@ref: 22758
BacDive-ID: 131531
DSM-Number: 29508
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, rod-shaped
description: Adlercreutzia muris WCA-131-CoC-2 is an anaerobe, mesophilic, rod-shaped bacterium that was isolated from colonic content; wildtype C57BL/6 mouse.
NCBI tax id
- NCBI tax id: 1796610
- Matching level: species
strain history
@ref | history |
---|---|
22758 | <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; WCA-131-CoC-2 |
67771 | <- Barbel Fosel, DSM <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany, WCA-131-CoC-2 |
doi: 10.13145/bacdive131531.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Coriobacteriia
- order: Eggerthellales
- family: Eggerthellaceae
- genus: Adlercreutzia
- species: Adlercreutzia muris
- full scientific name: Adlercreutzia muris (Lagkouvardos et al. 2016) Nouioui et al. 2018
synonyms
- @ref: 20215
- synonym: Enterorhabdus muris
@ref: 22758
domain: Bacteria
phylum: Actinobacteria
class: Coriobacteriia
order: Eggerthellales
family: Eggerthellaceae
genus: Adlercreutzia
species: Adlercreutzia muris
full scientific name: Adlercreutzia muris (Lagkouvardos et al. 2016) Nouioui et al. 2018
strain designation: WCA-131-CoC-2
type strain: yes
Morphology
cell morphology
@ref | cell shape | gram stain | confidence |
---|---|---|---|
67771 | rod-shaped | ||
67771 | positive | ||
69480 | positive | 99.72 |
colony morphology
- @ref: 22758
- incubation period: 2-3 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
22758 | WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) | yes | https://mediadive.dsmz.de/medium/339 | Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water |
22758 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | yes | https://mediadive.dsmz.de/medium/78 | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water |
22758 | FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) | yes | https://mediadive.dsmz.de/medium/1203 | Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
22758 | positive | growth | 37 | mesophilic |
67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
22758 | anaerobe | |
67771 | anaerobe | |
69480 | anaerobe | 99.999 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.977 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | + | hydrolysis |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 17632 | nitrate | - | reduction |
68380 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | histidine arylamidase | - | |
68380 | glycin arylamidase | - | |
68380 | alanine arylamidase | - | 3.4.11.2 |
68380 | tyrosine arylamidase | - | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | - | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | alkaline phosphatase | - | 3.1.3.1 |
68380 | tryptophan deaminase | - | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | alpha-glucosidase | - | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | - | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | arginine dihydrolase | + | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
22758 | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - |
22758 | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
22758 | colonic content; wildtype C57BL/6 mouse | Freising | Germany | DEU | Europe |
67771 | From colonic content, wildtype C57BL/6 mouse | Freising | Germany | DEU | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Muridae (Mouse/Rat) |
#Host Body-Site | #Gastrointestinal tract | #Large intestine |
taxonmaps
- @ref: 69479
- File name: preview.99_48877.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15800;96_19613;97_24345;98_30792;99_48877&stattab=map
- Last taxonomy: Adlercreutzia muris subclade
- 16S sequence: KR364735
- Sequence Identity:
- Total samples: 15868
- soil counts: 183
- aquatic counts: 76
- animal counts: 15554
- plant counts: 55
Sequence information
16S sequences
- @ref: 22758
- description: Enterorhabdus muris strain WCA-131-CoC-2 16S ribosomal RNA gene, partial sequence
- accession: KR364735
- length: 1399
- database: ena
- NCBI tax ID: 1796610
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Adlercreutzia muris strain DSM 29508 | 1796610.10 | wgs | patric | 1796610 |
66792 | Adlercreutzia muris DSM 29508 | 2889625949 | draft | img | 1796610 |
67771 | Adlercreutzia muris DSM 29508 | GCA_008831045 | contig | ncbi | 1796610 |
66792 | Adlercreutzia muris DSM 29508 | GCA_024623245 | contig | ncbi | 1796610 |
GC content
@ref | GC-content | method |
---|---|---|
22758 | 65.1 | sequence analysis |
67771 | 65.1 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 93.917 | no |
gram-positive | yes | 90.591 | yes |
anaerobic | yes | 98.874 | yes |
aerobic | no | 96.385 | yes |
halophile | no | 85.216 | no |
spore-forming | no | 94.68 | no |
glucose-util | yes | 57.788 | no |
flagellated | no | 98.527 | no |
thermophile | no | 99.189 | no |
glucose-ferment | yes | 52.895 | no |
External links
@ref: 22758
culture collection no.: DSM 29508, KCTC 15543
straininfo link
- @ref: 89945
- straininfo: 404850
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Genetics | 31753955 | Draft Genome Sequences of Type Strains of Adlercreutzia muris and Ellagibacter urolithinifaciens, Belonging to the Family Eggerthellaceae. | Danylec N, Stoll DA, Huch M | Microbiol Resour Announc | 10.1128/MRA.01306-19 | 2019 | ||
Phylogeny | 34870581 | Adlercreutzia hattorii sp. nov., an equol non-producing bacterium isolated from human faeces. | Sakamoto M, Ikeyama N, Yuki M, Murakami T, Mori H, Iino T, Ohkuma M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005121 | 2021 | Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Equol/biosynthesis, Feces/microbiology, Humans, Japan, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Pathogenicity |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22758 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29508 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29508) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
68380 | Automatically annotated from API rID32A | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
89945 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404850.1 |