Strain identifier

BacDive ID: 131531

Type strain: Yes

Species: Adlercreutzia muris

Strain Designation: WCA-131-CoC-2

Strain history: <- Barbel Fosel, DSM <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany, WCA-131-CoC-2

NCBI tax ID(s): 1796610 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22758

BacDive-ID: 131531

DSM-Number: 29508

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, rod-shaped

description: Adlercreutzia muris WCA-131-CoC-2 is an anaerobe, mesophilic, rod-shaped bacterium that was isolated from colonic content; wildtype C57BL/6 mouse.

NCBI tax id

  • NCBI tax id: 1796610
  • Matching level: species

strain history

@refhistory
22758<- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; WCA-131-CoC-2
67771<- Barbel Fosel, DSM <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany, WCA-131-CoC-2

doi: 10.13145/bacdive131531.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Coriobacteriia
  • order: Eggerthellales
  • family: Eggerthellaceae
  • genus: Adlercreutzia
  • species: Adlercreutzia muris
  • full scientific name: Adlercreutzia muris (Lagkouvardos et al. 2016) Nouioui et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Enterorhabdus muris

@ref: 22758

domain: Bacteria

phylum: Actinobacteria

class: Coriobacteriia

order: Eggerthellales

family: Eggerthellaceae

genus: Adlercreutzia

species: Adlercreutzia muris

full scientific name: Adlercreutzia muris (Lagkouvardos et al. 2016) Nouioui et al. 2018

strain designation: WCA-131-CoC-2

type strain: yes

Morphology

cell morphology

@refcell shapegram stainconfidence
67771rod-shaped
67771positive
69480positive99.72

colony morphology

  • @ref: 22758
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22758WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
22758CHOPPED MEAT MEDIUM (DSMZ Medium 78)yeshttps://mediadive.dsmz.de/medium/78Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
22758FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)yeshttps://mediadive.dsmz.de/medium/1203Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22758positivegrowth37mesophilic
67771positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
22758anaerobe
67771anaerobe
69480anaerobe99.999

spore formation

@refspore formationconfidence
69481no100
69480no99.977

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
22758-+---------------+/------------
22758-+--------------+/------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
22758colonic content; wildtype C57BL/6 mouseFreisingGermanyDEUEurope
67771From colonic content, wildtype C57BL/6 mouseFreisingGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Gastrointestinal tract#Large intestine

taxonmaps

  • @ref: 69479
  • File name: preview.99_48877.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15800;96_19613;97_24345;98_30792;99_48877&stattab=map
  • Last taxonomy: Adlercreutzia muris subclade
  • 16S sequence: KR364735
  • Sequence Identity:
  • Total samples: 15868
  • soil counts: 183
  • aquatic counts: 76
  • animal counts: 15554
  • plant counts: 55

Sequence information

16S sequences

  • @ref: 22758
  • description: Enterorhabdus muris strain WCA-131-CoC-2 16S ribosomal RNA gene, partial sequence
  • accession: KR364735
  • length: 1399
  • database: ena
  • NCBI tax ID: 1796610

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Adlercreutzia muris strain DSM 295081796610.10wgspatric1796610
66792Adlercreutzia muris DSM 295082889625949draftimg1796610
67771Adlercreutzia muris DSM 29508GCA_008831045contigncbi1796610
66792Adlercreutzia muris DSM 29508GCA_024623245contigncbi1796610

GC content

@refGC-contentmethod
2275865.1sequence analysis
6777165.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno93.917no
gram-positiveyes90.591yes
anaerobicyes98.874yes
aerobicno96.385yes
halophileno85.216no
spore-formingno94.68no
glucose-utilyes57.788no
flagellatedno98.527no
thermophileno99.189no
glucose-fermentyes52.895no

External links

@ref: 22758

culture collection no.: DSM 29508, KCTC 15543

straininfo link

  • @ref: 89945
  • straininfo: 404850

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics31753955Draft Genome Sequences of Type Strains of Adlercreutzia muris and Ellagibacter urolithinifaciens, Belonging to the Family Eggerthellaceae.Danylec N, Stoll DA, Huch MMicrobiol Resour Announc10.1128/MRA.01306-192019
Phylogeny34870581Adlercreutzia hattorii sp. nov., an equol non-producing bacterium isolated from human faeces.Sakamoto M, Ikeyama N, Yuki M, Murakami T, Mori H, Iino T, Ohkuma MInt J Syst Evol Microbiol10.1099/ijsem.0.0051212021Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Equol/biosynthesis, Feces/microbiology, Humans, Japan, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAPathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22758Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29508Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29508)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89945Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404850.1