Strain identifier

BacDive ID: 131523

Type strain: Yes

Species: Pasteurella caecimuris

Strain Designation: AA-424-CC-1

Culture col. no.: DSM 28627, KCTC 52216

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General

@ref: 22750

BacDive-ID: 131523

DSM-Number: 28627

keywords: 16S sequence, genome sequence, Bacteria, mesophilic

description: Pasteurella caecimuris AA-424-CC-1 is a mesophilic bacterium that was isolated from caecal content; TNFdeltaARE/+ C57BL/6 mouse.

strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; AA-424-CC-1(A)

doi: 10.13145/bacdive131523.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Pasteurella
  • species: Pasteurella caecimuris
  • full scientific name: Pasteurella caecimuris Lagkouvardos et al. 2016

@ref: 22750

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Pasteurella

species: Pasteurella caecimuris

full scientific name: Pasteurella caecimuris Lagkouvardos et al. 2016

strain designation: AA-424-CC-1

type strain: yes

Morphology

colony morphology

  • @ref: 22750
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlink
22750LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium381.pdf
22750BHI MEDIUM (DSMZ Medium 215)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium215.pdf
22750COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf

culture temp

  • @ref: 22750
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
22750++/-+-+--+------------+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
22750--+-+++/---+/-++/-+/----+/--+------++/-----+

Isolation, sampling and environmental information

isolation

  • @ref: 22750
  • sample type: caecal content; TNFdeltaARE/+ C57BL/6 mouse
  • geographic location: Freising
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Gastrointestinal tract#Large intestine
#Host Body Product#Gastrointestinal tract#Caecal content

Sequence information

16S sequences

  • @ref: 22750
  • description: Pasteurella caecimuris strain AA-424-CC-1 16S ribosomal RNA gene, partial sequence
  • accession: KR364783
  • length: 1423
  • database: ena
  • NCBI tax ID: 1796644

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pasteurella caecimuris NM44_TS2-9GCA_004793515contigncbi1796644
66792Pasteurella caecimuris strain NM44_TS2-91796644.5wgspatric1796644

GC content

  • @ref: 22750
  • GC-content: 40.2
  • method: sequence analysis

External links

@ref: 22750

culture collection no.: DSM 28627, KCTC 52216

Reference

@idauthorstitledoi/urlcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
22750Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28627Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28627)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes