Strain identifier

BacDive ID: 131514

Type strain: No

Species: Terrisporobacter muris

Strain Designation: CCK3R4-PYG-107

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; CCK3R4-PYG-107

NCBI tax ID(s): 2963284 (species)

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General

@ref: 22741

BacDive-ID: 131514

DSM-Number: 29186

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Terrisporobacter muris CCK3R4-PYG-107 is an anaerobe, mesophilic bacterium that was isolated from caecal content; wildtype C57BL/6 mouse.

NCBI tax id

  • NCBI tax id: 2963284
  • Matching level: species

strain history

  • @ref: 22741
  • history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; CCK3R4-PYG-107

doi: 10.13145/bacdive131514.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Terrisporobacter
  • species: Terrisporobacter muris
  • full scientific name: Terrisporobacter muris Afrizal et al. 2022

  • synonyms

    • @ref: 20215
    • synonym: Terrisporobacter othiniensis

@ref: 22741

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Terrisporobacter

species: Terrisporobacter sp.

full scientific name: Terrisporobacter sp.

strain designation: CCK3R4-PYG-107

type strain: no

Morphology

colony morphology

  • @ref: 22741
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22741CHOPPED MEAT MEDIUM (DSMZ Medium 78)yeshttps://mediadive.dsmz.de/medium/78Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
22741CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 22741
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 22741
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
22741---+/-----+/--------+-+--+/--------

Isolation, sampling and environmental information

isolation

  • @ref: 22741
  • sample type: caecal content; wildtype C57BL/6 mouse
  • geographic location: Freising
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Gastrointestinal tract#Large intestine
#Host Body Product#Gastrointestinal tract#Caecal content

taxonmaps

  • @ref: 69479
  • File name: preview.99_2.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2;96_2;97_2;98_2;99_2&stattab=map
  • Last taxonomy: Terrisporobacter
  • 16S sequence: KR364793
  • Sequence Identity:
  • Total samples: 26442
  • soil counts: 572
  • aquatic counts: 843
  • animal counts: 24867
  • plant counts: 160

Sequence information

16S sequences

  • @ref: 22741
  • description: Terrisporobacter sp. CCK3R4-PYG-107 16S ribosomal RNA gene, partial sequence
  • accession: KR364793
  • length: 1444
  • database: ena
  • NCBI tax ID: 1796653

Genome sequences

  • @ref: 66792
  • description: Terrisporobacter muris DSM 29186
  • accession: GCA_024621905
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2963284

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno93.793no
gram-positiveyes91.395no
anaerobicyes98.983yes
aerobicno98.325no
halophileno85.644no
spore-formingyes70.729no
motileno89.084no
glucose-fermentyes67.007no
thermophileno94.565yes
glucose-utilyes90.757no

External links

@ref: 22741

culture collection no.: DSM 29186

straininfo link

  • @ref: 89928
  • straininfo: 402873

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22741Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29186Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29186)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89928Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402873.1