Strain identifier

BacDive ID: 131504

Type strain: No

Species: Enterobacter asburiae

Strain Designation: JM-458

Strain history: CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain JM-458

NCBI tax ID(s): 61645 (species)

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General

@ref: 22731

BacDive-ID: 131504

DSM-Number: 29346

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Enterobacter asburiae JM-458 is a mesophilic, Gram-negative, motile bacterium that was isolated from rhizosphere of 1-week-old corn plant Zea mays, cultivar 'Sweet Belle'.

NCBI tax id

  • NCBI tax id: 61645
  • Matching level: species

strain history

@refhistory
22731<- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; JM-458 <- J. McInroy, Department of Entomology and Plant Pathology, Auburn University, Alabama, USA; JM-458
121169CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain JM-458

doi: 10.13145/bacdive131504.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter asburiae
  • full scientific name: Enterobacter asburiae Brenner et al. 1988

  • synonyms

    • @ref: 20215
    • synonym: Enterobacter muelleri

@ref: 22731

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter muelleri

full scientific name: Enterobacter asburiae Brenner et al. 1988 emend. Hoffmann et al. 2005

strain designation: JM-458

type strain: no

Morphology

cell morphology

  • @ref: 121169
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

multimedia

  • @ref: 22731
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29346.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22731TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
41949MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121169CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
22731positivegrowth28mesophilic
41949positivegrowth30mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
22731++--+----+-++++-+-++-
22731++--+----+-++++-+-++-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
22731rhizosphere of 1-week-old corn plant Zea mays, cultivar 'Sweet Belle'Zea maysAlabama, Elmore county, Tallassee, E.V. Smith Research CenterUSAUSANorth America
121169Environment, Soil, rhizosphereAlabamaUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
227311Risk group (German classification)
1211692Risk group (French classification)

Sequence information

16S sequences

  • @ref: 22731
  • description: Enterobacter muelleri strain JM-458 16S ribosomal RNA gene, partial sequence
  • accession: KP345900
  • length: 1422
  • database: ena
  • NCBI tax ID: 61645

Genome sequences

  • @ref: 66792
  • description: Enterobacter asburiae JM-458
  • accession: 2791355289
  • assembly level: draft
  • database: img
  • NCBI tax ID: 61645

External links

@ref: 22731

culture collection no.: DSM 29346, CCM 8546, CIP 110826, LMG 28480

straininfo link

  • @ref: 89920
  • straininfo: 402445

literature

  • topic: Phylogeny
  • Pubmed-ID: 26294947
  • title: Enterobacter muelleri sp. nov., isolated from the rhizosphere of Zea mays.
  • authors: Kampfer P, McInroy JA, Glaeser SP
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000547
  • year: 2015
  • mesh: Alabama, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Enterobacter/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Genes, Bacterial, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Zea mays/*microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22731Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29346Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29346)
41949Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30643
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
89920Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402445.1
121169Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110826Collection of Institut Pasteur (CIP 110826)